AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr06g04391 ATGTGGATGAACGTTCCAACAGCAATTCTCCTGGTATCAGGAGTTCATATTATAATAACCGAAGTGGAAATCCGTTGGAAGATCAGGAAACCTAACAGACAATCATACTTGGAACATCTAGAGCGAAAACAAATGTCTGTGAATGATTCTCGTCTTACCACGTTGCCTCCCCAACCTAAATGGAAGAAGAAGATTGATTCTCCGGTAGTTGAGGCTGCAATGGAGGATTTCGTTAATAAGCTTTTGCATGAATTTGTGGTTGATTCGTGGTATTCGGCTTTAACACCTGATAAAGAAGCACCACAGCTTCTACATTCAGTTATTATGGAGGTTCTTGCTGAAATCTCTGCAAGAGTCAAAGACATAAACCTTGTTGACTTGCTAACTAGGGATGTAGTTGATTTAGTAGGGGAACACTTAGAGGTTTTCAGAAAAATGCAAGCGGCAATTGGGAGGGAGGTTATGGTGACATTATCTTCTGACGAACGAGATGAAAGATTAAAACACCATCTAATGGCTTCTAAGGAGCTCCATCCAGCTTTAATATCTTCAGAGAGTGAGTACAAGTTTCTTAAACGAATTATAGGGGCGCTTTTGACAGCAGTTCTTAGACCACGAGAAGCGCAGTGCCCTGTAGTTCGGTGCATTGCACGTGAGCTTTTAACATGTTTGGTAGTCGAACCAGTAATGCGATTTGCATGCCCTGGGCGTATCAATGAGTTGATTGAGGCTATTTTTCTAGCCAACAATAATATAAAAGGGAAAGATGCAGGTGGTAATCAGTCAACTAATGTAATGGGTCAAAGTCAAACCCCGAATCAGGAAAAAAGTCAAGATTTGGGTTGCATTAAAGATGGGTCTTCTAGCAGTCAAAAGAATGATACATCTAAAGTCCAAAAGGAAACGGTTTTAAACCCATCTGGGCCCATGGCTTGTGGTCCGGTTCAAGATGAACCGTTGAACCCACCGACATCTGCTTGGGCCCGGGGTCTTGAGGCTGCAACCCAAAGGAGAACAGAAGTCCTTCATCCTGAAAATCTTGAAAATATGTGGACCAAAGGAAGAAACTACAAAAAGACATCTCATAAGAAAATAGAAGGCTCCGGCATAAATGAAAATAATAATGATCAAACACTAGAGCAAAATCTTGATGGAGTTTTGAGTGACCAAAGCAAGACATCTGATCCTTCAGATTTAGCTAATGAAAATACCTATAATGTTCATGGAAGTAAATCTATTATGGAAAGATCAAATAGTGTTTCTGACTTGAACATTCAAAATCAAGTTGGTGGAAATGCGAATGTTGGGGGAGATAATGATGTAAATAGTGTTGATATTGTTTCGGATAAAGTGACACGTACTGAAGGGTTCGTTCCAAAGCTCAGGTGTCGGGTTTTAGGAGCATACTATGAAAATATTGACTCAAAATCATTTGCAGTTTATTCGATTGCGGTTACAGATGCTGATAACAAGACTTGGTTGGTGAAAAGAAGGTATTGA 1500 40.13 MWMNVPTAILLVSGVHIIITEVEIRWKIRKPNRQSYLEHLERKQMSVNDSRLTTLPPQPKWKKKIDSPVVEAAMEDFVNKLLHEFVVDSWYSALTPDKEAPQLLHSVIMEVLAEISARVKDINLVDLLTRDVVDLVGEHLEVFRKMQAAIGREVMVTLSSDERDERLKHHLMASKELHPALISSESEYKFLKRIIGALLTAVLRPREAQCPVVRCIARELLTCLVVEPVMRFACPGRINELIEAIFLANNNIKGKDAGGNQSTNVMGQSQTPNQEKSQDLGCIKDGSSSSQKNDTSKVQKETVLNPSGPMACGPVQDEPLNPPTSAWARGLEAATQRRTEVLHPENLENMWTKGRNYKKTSHKKIEGSGINENNNDQTLEQNLDGVLSDQSKTSDPSDLANENTYNVHGSKSIMERSNSVSDLNIQNQVGGNANVGGDNDVNSVDIVSDKVTRTEGFVPKLRCRVLGAYYENIDSKSFAVYSIAVTDADNKTWLVKRRY 499
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr06g04391 499 MobiDBLite consensus disorder prediction 258 303 - -
Amtr06g04391 499 Pfam PXA domain 67 244 IPR003114 -
Amtr06g04391 499 SMART PXA-3 67 250 IPR003114 -
Amtr06g04391 499 PANTHER PX SERINE-THREONINE KINASE PXK 1 499 IPR051837 -
Amtr06g04391 499 ProSiteProfiles PXA domain profile. 67 250 IPR003114 -
Amtr06g04391 499 MobiDBLite consensus disorder prediction 258 320 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr06g04391 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
11106 Amtr02g02868 Amtr06g04391
358185 Amtr01g04347 Amtr06g04391
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:105828436 Amtr06g04391 Amtr-Chr6:97392730 dispersed
Amtr Amtr-Chr6:97392730 Amtr08g01672 Amtr-Chr8:38709402 dispersed
Amtr Amtr-Chr1:117320317 Amtr06g04391 Amtr-Chr6:97392730 wgd
Amtr Amtr-Chr2:63477643 Amtr06g04391 Amtr-Chr6:97392730 wgd