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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr07g04518 ATGTCATCGACGGAACCTCCCTCCACCACCCTCGATAAACCCCTCCACCTCCTCACCGAAGACGACATTTCTCAACTCACTCGTGAAGATTGCCGCCGTTTCCTTAAACTAAAAGGGATGCGAAGGCCGTCGTGGAACAAATCACAGGCGATCCAGCAGGTGATAATGCTAAAAGCGTTGCTGGAACCGTCGCCGGAGTCCGATGAAGGTGGACGGAAGTTGTACATTACGTCTACTCGGCAGGAGGAGTCTCCGGCTGCTTGTGTCCAGAAAGGAACAAGTGGGGAGACGGAGATCTCTGTTTCAGTGGAGGAATCTGTACCAGGTCAGCGTAATGATGCAGAGAAGTCTGATGTTTTGGGGGATAATGATTCTGCTCCTCCTCCTCCTCCTCCTCGGATTGGTGGTGGGACAGAAGAGACAAAAGGGCAAATGACAATATTTTATTGTGGCAAGGTGAATGTATATGATGATGTTCCAGCTGATAAGGCACATGCACTATTTCAGCTTGCTGCAAGTTCGCTCCAGTTTCCTCAAGAATATCCATTTGATGGAAACATGTTGCAAGCTCCAAGCATCAATGTGGGCCCGGATTTCCCTCCCGTGGTTTCGCCAGTTTTGCAAACAGTGAGAGTGGCGGATAACTACCGGCTGCACAAAGAAGAAGGTAGCATATTGCGTGAAGACAATTCTGCCGAAGGTTCAGCAAGCAGAAAAGCATCAGTTCAGAGATATCTTGAGAAGCGGAAAGACAGGTTTAAGAGCAAGAGGAAAGCAGGAGCTACCTTTGATGTTTATGCTAACCATCCGATTGGAAACCATAACCTAAACGAGCAGTCAAGCAGGAGTGCCACTTGCTCCCCACCTCTTGTCAGACCACCAAACACTCCTAACCGCTTTACCTAA 906 48.9 MSSTEPPSTTLDKPLHLLTEDDISQLTREDCRRFLKLKGMRRPSWNKSQAIQQVIMLKALLEPSPESDEGGRKLYITSTRQEESPAACVQKGTSGETEISVSVEESVPGQRNDAEKSDVLGDNDSAPPPPPPRIGGGTEETKGQMTIFYCGKVNVYDDVPADKAHALFQLAASSLQFPQEYPFDGNMLQAPSINVGPDFPPVVSPVLQTVRVADNYRLHKEEGSILREDNSAEGSASRKASVQRYLEKRKDRFKSKRKAGATFDVYANHPIGNHNLNEQSSRSATCSPPLVRPPNTPNRFT 301
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr07g04518 301 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 44 279 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Amtr07g04518 301 MobiDBLite consensus disorder prediction 77 140 - -
Amtr07g04518 301 MobiDBLite consensus disorder prediction 267 301 - -
Amtr07g04518 301 SMART tify-2 138 173 IPR010399 -
Amtr07g04518 301 Pfam Jas motif 238 256 IPR018467 -
Amtr07g04518 301 MobiDBLite consensus disorder prediction 77 107 - -
Amtr07g04518 301 Pfam tify domain 140 172 IPR010399 -
Amtr07g04518 301 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Amtr07g04518 301 MobiDBLite consensus disorder prediction 272 289 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr07g04518 K13464 jasmonate ZIM domain-containing protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr7:94910140 Amtr12g01630 Amtr-Chr12:38612464 dispersed
Amtr Amtr-Chr7:94910140 Amtr10g00183 Amtr-Chr10:3444959 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Amtr01g02536 . 120 336 Tify gene family AT3G17860 36.652 1.91e-20 86.7
Amtr02g01324 WGDA 1 332 Tify gene family AT3G17860 34.118 1.43e-33 124.0
Amtr02g02244 . 18 270 Tify gene family AT3G21175 57.143 3.02e-90 271.0
Amtr02g03086 WGDA 22 231 Tify gene family AT1G19180 33.484 3.14e-25 98.2
Amtr02g05726 WGDA 12 227 Tify gene family AT1G19180 32.579 2.42e-20 84.3
Amtr03g02317 WGDA 4 265 Tify gene family AT4G32570 36.842 2.26e-41 146.0
Amtr04g00490 WGDA 3 127 Tify gene family AT1G30135 40.458 4.96e-19 75.1
Amtr04g01222 ACH,WGDA 1 251 Tify gene family AT1G19180 34.749 5.51e-35 122.0
Amtr04g05396 WGDA 1 265 Tify gene family AT4G32570 36.137 2.47e-41 146.0
Amtr05g00960 . 77 258 Tify gene family AT4G24470 53.804 7.29e-62 194.0
Amtr06g02406 ACH,WGDA 1 252 Tify gene family AT1G19180 32.567 2.41e-26 99.4
Amtr06g05898 WGDA 8 192 Tify gene family AT5G13220 35.602 6.11e-27 99.4
Amtr07g00655 WGDA 1 192 Tify gene family AT5G13220 38.265 5.75e-24 92.0
Amtr07g04518 . 10 293 Tify gene family AT4G14720 37.7 1.06e-47 160.0
Amtr07g06434 . 1 212 Tify gene family AT1G72450 30.045 2.79e-18 79.3
Amtr08g00104 ACH 13 228 Tify gene family AT1G74950 30.876 6.06e-23 90.5
Amtr08g04856 . 5 128 Tify gene family AT1G30135 41.27 1.15e-18 73.9
Amtr08g04859 WGDA 3 128 Tify gene family AT1G30135 44.118 7.88e-25 90.1
Amtr09g02703 . 24 192 Tify gene family AT5G13220 36.686 7.44e-24 90.1
Amtr09g02834 WGDA 1 244 Tify gene family AT1G70700 36.299 1.61e-28 108.0
Amtr10g00183 . 119 244 Tify gene family AT1G70700 38.095 3.85e-15 69.7
Amtr11g03081 . 78 284 Tify gene family AT3G21175 65.7 1.16e-84 256.0
Amtr11g03797 WGDA 16 228 Tify gene family AT1G19180 34.234 2.65e-23 92.8
Amtr11g03796 ACH 20 228 Tify gene family AT1G19180 33.81 1.09e-19 82.8
Amtr11g03919 . 123 223 Tify gene family AT1G19180 33.663 9.88e-13 60.1
Amtr11g03966 . 116 225 Tify gene family AT1G74950 36.364 3.98e-13 60.8
Amtr12g01630 . 6 273 Tify gene family AT4G14720 40.203 4.53e-50 166.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Amtr tify 3.4e-15 No_clan TF Tify