AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr07g06208 ATGCTCAATCTTTTGAACAAAAAACTCCGGCAACTCTGCTCAAACCTCCGGTGTCCAATAAACCGCCGTAGAAAGCCCAAAATCATCATCAAAAGGTTAAAAAATCCAAACTTTATTAATAATAAACATTCATCAAACCCAAATGGGTCAGCCACAATTCACCCAAATAACCAATTATCTGTAACCCCAATAAGAATTGCATCTTTTAATGCAGCCCTGTTCTCCATGGCTCCTGCGTTGACCAAGAAAGGTCTAACCTTTGACTTTTTTAATAATGATCAAGATTCTTTCAAGGTAGCTTCTAATTCCTCAGTTTCAAAGTCAAAATCATTGGTTGATAGGCCCAAAAGTATATTAAAACAATCATCATTGCATTTAAGTTCAGTTAGTAGTTCAAATCATAGTTTGTTAGAACAGTCAAAGCAGCAGAAATATGCAAAGCCAAAGCTTAGGGTGTCTATTAATTTACCGGTCAACGAGATCTCGTTGAAGCGAAACGGGCAAATGGGGTTAGTTGTAGAGGGTACTGAAACCGACCCAAGTTTGAAAATAAGGAAGGTTTTGAAAGGAAAAGGTGTTTTGAGGGAGTTGGGAAGCGAAAGAGGCGAGTATCGGTCAACCAAGAGTGTTGTTGAGGTTTTGAGGGAATTGGATGCAGATATATTGGCTTTGCAGGATGTGAAAGCTGAAGAGGAAAAGGATATGAAGCCATTGTCTGATTTGGCTGCTGCTTTGGGTATGCATTATGTTTTTGCTGAAAGCTGGGCGCCTGAGTTTGGTAATGCGGTTTTGTCGAAATGGCCGATTAAACGGTCCAAGGTTCAGAAGATTTTTGATGAGTCTGATTTCAGGAATGTGTTAAAAGCGACAATTGATGTTCCCGAAACTGGAGAAGTTGATGTTCATTGCACGCTTCTTGATCATCTTGATGAGAATTGGCGAATGAAACAGATAAACGCAATAATCGAGTCTAATGAGAGACCACACATCTTAGCTGGAGTTATCAACTCCCTTGACGAAACAGACTACTCGACCGAAAGATGGACCGACATTGTTAAGTACTATGAAGAAATGGGAAAACCGACACCAAAAGTTGAAGTGATGAAGTACTTAAAGAACAAACAATACACCGATGCCAAGGACTGTGCAGGCGAATGCGAATCTGTAGTCATTATTGCTAAAGGCCAAAATGTGCAGGGTACGTGCAAATATGGTACTAGGGTAGATTACATATTGATGTCCCCTGATTCTCCCTACAAGTTTGTTCCGGGTTCATATATGGTTTTATCATCAAAAGGTACTTCTGACCATCATATAGTTAAAGTTGATGTAACGAAGGCAGACGATTCTTGTCAAGAACCGGTTGTTAGGAGGCAGCGACATCCTAAACAAAAAGTTGTGAAGATCACAAATTCTAACTCATCAAAAGGGATATGGAAAATGCAAACTTTAGCAGGGCATGGGAGATATAGGGACACAGAAAGTGATGTGGTTAAATAA 1500 39.8 MLNLLNKKLRQLCSNLRCPINRRRKPKIIIKRLKNPNFINNKHSSNPNGSATIHPNNQLSVTPIRIASFNAALFSMAPALTKKGLTFDFFNNDQDSFKVASNSSVSKSKSLVDRPKSILKQSSLHLSSVSSSNHSLLEQSKQQKYAKPKLRVSINLPVNEISLKRNGQMGLVVEGTETDPSLKIRKVLKGKGVLRELGSERGEYRSTKSVVEVLRELDADILALQDVKAEEEKDMKPLSDLAAALGMHYVFAESWAPEFGNAVLSKWPIKRSKVQKIFDESDFRNVLKATIDVPETGEVDVHCTLLDHLDENWRMKQINAIIESNERPHILAGVINSLDETDYSTERWTDIVKYYEEMGKPTPKVEVMKYLKNKQYTDAKDCAGECESVVIIAKGQNVQGTCKYGTRVDYILMSPDSPYKFVPGSYMVLSSKGTSDHHIVKVDVTKADDSCQEPVVRRQRHPKQKVVKITNSNSSKGIWKMQTLAGHGRYRDTESDVVK 499
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr07g06208 499 Pfam Endonuclease-Exonuclease-phosphatase family 202 332 IPR005135 GO:0003824(InterPro)
Amtr07g06208 499 FunFam Endonuclease-exonuclease-phosphatase family protein 196 447 - -
Amtr07g06208 499 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 49 443 IPR051916 GO:0005783(PANTHER)|GO:0006506(PANTHER)
Amtr07g06208 499 SUPERFAMILY DNase I-like 207 444 IPR036691 -
Amtr07g06208 499 Coils Coil 214 234 - -
Amtr07g06208 499 Gene3D Endonuclease-exonuclease-phosphatase 193 447 IPR036691 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr07g06208 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
360822 Amtr07g06208 Amtr12g00598
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr7:25106602 Amtr07g06208 Amtr-Chr7:131506933 dispersed
Amtr Amtr-Chr12:18333814 Amtr07g06208 Amtr-Chr7:131506933 wgd