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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr08g03952 ATGATTGCAAAACAATCCAAATCCCAATCTACACGTAAATCTAGAACCAAACTCCGTAAACCTAAATACCTAAGCCTCCGTTTTCAACTCACTGCCACCACACCACAAATGCCACCCATCAACCACCATAATCATGATCATAAACAACTTAACCTTTTTCCACTACACCCAGAGAACCTAGTGGAACAAGATAAAATAGACGAAGAACCTATCATTGGTTGCATGTTCTCATCTGGTGATGATGTAGACGTAGCAGCCACTACTCTCAATGGAATTCTATGCTCTGAAGCCGATGATGAGGAAGAGGATAACAGTCACAACACGAACAATGTTCCATCTCCTTCGTCGGTAAACTATGCCGACGAGGAGGTGGAACTTGTTCGGACCGCCATGAGGCGGAATAAAACGGACAAAGTTAATGATCAGGAAAAATGGGTTTGTTATTCGGAGGTTGTGGATAGGAAAAATGTGGTTAGAGAGATATCGTCGTCATCATCTACAACAGCTTTCTCCTGTCGTCGTAATAGCAGTACTACTAGTAATAGTATTAATATTAATAAGAATAAAAGCAAACTTGTGTTGAAGCTTGACTATGAGAAGATCATGAAGTCTTGGGTCAACAAGGGTCCACTTTACATTTCGGATGTGGATGCTCCACAACCACAAACTGTACCCGATCTCCAAGATGATCATGACTTCTTTTCACCATCTCTCATCAATGGCACAACACACGGTGAGCATGATAACGGTGACAATGGAGGGTCGTGGATGGTTCCGCAAACGGTACATAATGAAAACAATGGCATTAGCAAAGGAGATGTTGCATTGAAAGCGGGAGAGCCTAGTCTAGTGGCTCATAATAGAGAAGCAAGTGTACAAAGGTACAAAGAGAAAAGGCGTAACCGTTTGTTTGCTAAAACGGTACGCTATGAAGTACGAAAGCTCAATGCCGAGAAACGCCCTCGTGTTTAG 972 42.49 MIAKQSKSQSTRKSRTKLRKPKYLSLRFQLTATTPQMPPINHHNHDHKQLNLFPLHPENLVEQDKIDEEPIIGCMFSSGDDVDVAATTLNGILCSEADDEEEDNSHNTNNVPSPSSVNYADEEVELVRTAMRRNKTDKVNDQEKWVCYSEVVDRKNVVREISSSSSTTAFSCRRNSSTTSNSININKNKSKLVLKLDYEKIMKSWVNKGPLYISDVDAPQPQTVPDLQDDHDFFSPSLINGTTHGEHDNGDNGGSWMVPQTVHNENNGISKGDVALKAGEPSLVAHNREASVQRYKEKRRNRLFAKTVRYEVRKLNAEKRPRV 323
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr08g03952 323 ProSiteProfiles CCT domain profile. 288 323 IPR010402 GO:0005515(InterPro)
Amtr08g03952 323 Pfam CCT motif 288 323 IPR010402 GO:0005515(InterPro)
Amtr08g03952 323 MobiDBLite consensus disorder prediction 96 116 - -
Amtr08g03952 323 MobiDBLite consensus disorder prediction 240 273 - -
Amtr08g03952 323 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 11 323 IPR052453 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Amtr08g03952 323 MobiDBLite consensus disorder prediction 240 268 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr08g03952 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
358100 Amtr01g02054 Amtr08g03952
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr8:106543231 Amtr08g04179 Amtr-Chr8:110745865 dispersed
Amtr Amtr-Chr11:55028847 Amtr08g03952 Amtr-Chr8:106543231 dispersed
Amtr Amtr-Chr1:63870721 Amtr08g03952 Amtr-Chr8:106543231 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Amtr01g01090 . 61 210 C2C2-CO-like Transcription Factor family AT1G78600 44.737 9.18e-34 118.0
Amtr01g02325 . 12 401 C2C2-CO-like Transcription Factor family AT2G33500 40.941 2.16e-79 249.0
Amtr01g02930 WGDA 3 109 C2C2-CO-like Transcription Factor family AT4G27310 50.909 7.59e-32 114.0
Amtr01g03557 . 313 386 C2C2-CO-like Transcription Factor family AT5G24930 41.333 3.74e-11 62.4
Amtr01g04319 WGDA 1 204 C2C2-CO-like Transcription Factor family AT1G75540 50.0 2.00e-60 189.0
Amtr01g06085 ACH 1 331 C2C2-CO-like Transcription Factor family AT1G75540 41.983 9.76e-72 223.0
Amtr01g08364 . 9 347 C2C2-CO-like Transcription Factor family AT3G02380 52.561 1.13e-122 356.0
Amtr02g02589 ACH 1 281 C2C2-CO-like Transcription Factor family AT1G78600 41.554 9.78e-68 210.0
Amtr02g02611 ACH 1 224 C2C2-CO-like Transcription Factor family AT1G75540 51.082 1.45e-66 207.0
Amtr02g02723 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 52.646 5.53e-125 362.0
Amtr02g03603 ACH 289 399 C2C2-CO-like Transcription Factor family AT1G68520 42.342 2.99e-18 84.0
Amtr02g05168 ACH 220 327 C2C2-CO-like Transcription Factor family AT5G15850 37.719 4.09e-11 60.5
Amtr02g06532 . 240 319 C2C2-CO-like Transcription Factor family AT3G02380 35.0 3.24e-10 57.8
Amtr02g07807 WGDA 4 101 C2C2-CO-like Transcription Factor family AT5G54470 45.631 1.66e-27 99.0
Amtr02g08002 WGDA 1 299 C2C2-CO-like Transcription Factor family AT1G78600 48.544 3.04e-89 266.0
Amtr02g08077 WGDA 1 372 C2C2-CO-like Transcription Factor family AT5G48250 55.696 3.33e-133 384.0
Amtr03g03138 . 334 388 C2C2-CO-like Transcription Factor family AT5G24930 49.091 3.27e-11 62.4
Amtr03g04393 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 45.723 3.71e-81 247.0
Amtr03g04421 . 272 320 C2C2-CO-like Transcription Factor family AT3G02380 57.143 5.79e-13 65.9
Amtr03g04788 ACH 1 330 C2C2-CO-like Transcription Factor family AT1G75540 42.775 1.02e-71 223.0
Amtr03g04815 . 1 131 C2C2-CO-like Transcription Factor family AT5G48250 65.649 3.02e-55 175.0
Amtr03g04816 . 147 225 C2C2-CO-like Transcription Factor family AT3G07650 41.975 3.72e-11 56.2
Amtr04g01923 ACH 265 405 C2C2-CO-like Transcription Factor family AT1G68520 30.137 1.58e-06 47.8
Amtr04g04772 ACH 338 386 C2C2-CO-like Transcription Factor family AT5G24930 53.061 1.65e-10 59.7
Amtr06g01755 . 11 328 C2C2-CO-like Transcription Factor family AT2G47890 45.915 5.43e-90 272.0
Amtr06g03386 . 1 371 C2C2-CO-like Transcription Factor family AT3G07650 54.412 4.30e-135 389.0
Amtr06g03793 . 315 386 C2C2-CO-like Transcription Factor family AT5G24930 41.096 2.83e-11 62.8
Amtr06g04255 WGDA 1 206 C2C2-CO-like Transcription Factor family AT1G75540 49.761 2.30e-57 182.0
Amtr07g00430 . 11 117 C2C2-CO-like Transcription Factor family AT2G47890 58.333 1.48e-41 139.0
Amtr07g01199 ACH,WGDA 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.23 1.21e-135 390.0
Amtr07g01245 ACH,WGDA 1 297 C2C2-CO-like Transcription Factor family AT1G78600 51.466 5.28e-93 275.0
Amtr07g01376 WGDA 3 213 C2C2-CO-like Transcription Factor family AT4G27310 39.819 9.72e-34 118.0
Amtr07g01792 WGDA 45 406 C2C2-CO-like Transcription Factor family AT5G24930 45.669 1.67e-88 270.0
Amtr07g02858 ACH 281 331 C2C2-CO-like Transcription Factor family AT5G57660 52.941 2.01e-11 62.4
Amtr07g04693 . 9 345 C2C2-CO-like Transcription Factor family AT3G02380 49.34 1.94e-110 325.0
Amtr08g00070 . 5 221 C2C2-CO-like Transcription Factor family AT3G21150 30.088 3.66e-17 75.1
Amtr08g01717 . 202 270 C2C2-CO-like Transcription Factor family AT2G24790 43.478 3.82e-11 60.1
Amtr08g03952 WGDA 277 392 C2C2-CO-like Transcription Factor family AT1G68520 36.986 2.91e-16 77.0
Amtr08g04179 . 5 401 C2C2-CO-like Transcription Factor family AT1G68520 44.191 2.66e-99 301.0
Amtr08g04665 WGDA 3 114 C2C2-CO-like Transcription Factor family AT4G27310 47.788 2.73e-28 105.0
Amtr09g01031 . 315 388 C2C2-CO-like Transcription Factor family AT5G24930 40.541 3.24e-11 62.4
Amtr09g02979 . 10 268 C2C2-CO-like Transcription Factor family AT1G68190 39.024 5.57e-56 186.0
Amtr09g04850 ACH 255 331 C2C2-CO-like Transcription Factor family AT5G57660 42.857 2.83e-11 61.2
Amtr10g02262 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 57.534 5.83e-80 235.0
Amtr10g02388 . 3 80 C2C2-CO-like Transcription Factor family AT4G27310 60.759 2.38e-26 99.4
Amtr11g00494 WGDA 45 406 C2C2-CO-like Transcription Factor family AT5G24930 45.823 8.81e-92 279.0
Amtr11g02545 ACH,WGDA 289 401 C2C2-CO-like Transcription Factor family AT1G68520 42.478 6.95e-19 85.5
Amtr11g03284 . 1 372 C2C2-CO-like Transcription Factor family AT3G07650 54.497 1.92e-135 389.0
Amtr11g03631 . 8 355 C2C2-CO-like Transcription Factor family AT5G57660 47.396 2.97e-102 305.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Amtr CCT 5e-13 CL0281 TR Others