AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr08g04017 ATGAAGACATCGTTTGGAAAATTAGGGCGTAAATTAACGATGCAGAAAAGCGATATGAAAGAGATGAAAGATCATCAGGCTTCTGCACATGTAGATGAGCTTAATCAGGCTTCGAAGGATATACAAAATATGAGAAGCTGCTATGATGGCTTATTACTTGCAGCTGGTGCAACAGCGAATAGTATATATGAATTTTCGGAGTCGCTAAATGAAATGGGGAACTGTTTGCTAACAAAAACCTCTGCAGCCTTTGCTGATGAAAACGGAAACGTGCTAGCAACTTTGGGGAATTTGCAATTGGAACTTCAGAAAATTGCTGATACTTATCGTTCTTATGTAGTTGTGACAATCACCAACCCAACAGACTCTCTCCTCAGTGAGTTGCTCAAAGTGGAGGAAATGAAACTTCAATGTCATGAGAAAAGAGAAGTCTATGATCACATGATGGCTCAACAAAGAGAGAAGGGAAAACTGAAAAATGGTAAAGTTGAAAGTTCAGTTGCACAAAGACTGAAAGAAGCTCAAGATGAATATGATGAAATGGCTAGATTATGTGTATTTCGGGTGAAATCCCTTAAGGATGGACAATGGCGTAGTCTTTTGACACTAGCTGCTCGCCATCATGCCGCACAGTTGAATTTCTTTCGCAAGGGACTTAAAGCTATTGAAGCAGTTGAACCTTTTATAAGAAATGTTGCCGAAAAGCATCACATCGACTGCCAACTCAGGGGATTGTATGATTGTGGGTCTCAGGAAGGTGAACCTATGAGTGGCCATGAAAGCACTAATGATGGAGAATTGAGTTTTGATTATAAACAAAAGAAACAAGGACTTGATGACGATGGCACCTCACCAAATCCAATGGAGCTGGACCAGGTGGATGTGCCGTATTTTCAAGCTTCAAATTTAGACGATTCAGAGATGAATCAGAATAGACATAAAGGGGAGCAGCTTTTCGGTAGGCAAACTAGAGGTAGCAGCTATTCTGCCCCACTATACCCAGAAAAAAGTAAGGGATCTGAAAAGCATAAGGAAAATCAAACCTCGCCGAAATCTTACTCTTATGTACTACCTCCACCCGTTGTGGATACCCGAAATCCAATTTTAAAACCTGCTACATCTGTTTCTCATTCAACCCCCTTTCAAAATGTGCAACACGATAGCACATCAATGGCTGCTTTGGCCTCGAAACCCAAGTCAACAATAAAAACTGGTAACATTATTACTCCATCCATCCAGTTACCCTCGCCCACCACGTCTACCGGAAGATCTTCATTCTCACAACAGGATAGTTATTACAGAACCAATAGCAGTAAAGTAGACAGAAGACAATCTTACTCTGGCCCGTTACCACCAAGCAAGCAGTTTTCTTTTAAAATTGCATCTAATAGTAGCGGGCCCATTAGTTCTACCGAACTTCCTCATCCGCCTTCTCGGTCCCCTGTTTCTCAGCCCAATTTGTCAGCTAGTCCTTCACCTCCCCCTTTATCTTCTCCTAAAATAAGTGAGCTTCATGAGCTTCCTAGGCCGCCTCCTAGTAGTCTAGCCTTCTCTAAACCCGTTGCTATTTCGGGTGGATTTAGTCGACATTCAGCACCATTACTTTCAAAAAATCAAGAAATTTCTCCGCCTAATAAACGGGCTATGCTAACATCCTCAACTTGTGCATCACCTCTTCCTCTTCCCCCTTCTGTTGTGAAATTCAGCTCAAGTAACAGCGGGACCTGA 1728 42.07 MKTSFGKLGRKLTMQKSDMKEMKDHQASAHVDELNQASKDIQNMRSCYDGLLLAAGATANSIYEFSESLNEMGNCLLTKTSAAFADENGNVLATLGNLQLELQKIADTYRSYVVVTITNPTDSLLSELLKVEEMKLQCHEKREVYDHMMAQQREKGKLKNGKVESSVAQRLKEAQDEYDEMARLCVFRVKSLKDGQWRSLLTLAARHHAAQLNFFRKGLKAIEAVEPFIRNVAEKHHIDCQLRGLYDCGSQEGEPMSGHESTNDGELSFDYKQKKQGLDDDGTSPNPMELDQVDVPYFQASNLDDSEMNQNRHKGEQLFGRQTRGSSYSAPLYPEKSKGSEKHKENQTSPKSYSYVLPPPVVDTRNPILKPATSVSHSTPFQNVQHDSTSMAALASKPKSTIKTGNIITPSIQLPSPTTSTGRSSFSQQDSYYRTNSSKVDRRQSYSGPLPPSKQFSFKIASNSSGPISSTELPHPPSRSPVSQPNLSASPSPPPLSSPKISELHELPRPPPSSLAFSKPVAISGGFSRHSAPLLSKNQEISPPNKRAMLTSSTCASPLPLPPSVVKFSSSNSGT 575
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr08g04017 575 MobiDBLite consensus disorder prediction 316 359 - -
Amtr08g04017 575 MobiDBLite consensus disorder prediction 531 575 - -
Amtr08g04017 575 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 569 IPR037488 -
Amtr08g04017 575 MobiDBLite consensus disorder prediction 402 575 - -
Amtr08g04017 575 Gene3D Arfaptin homology (AH) domain-BAR domain 24 243 IPR027267 -
Amtr08g04017 575 SUPERFAMILY BAR-IMD domain-like 32 230 IPR027267 -
Amtr08g04017 575 CDD BAR 31 227 - -
Amtr08g04017 575 MobiDBLite consensus disorder prediction 402 486 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr08g04017 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
13218 Amtr07g05144 Amtr08g04017
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr1:198435724 Amtr08g04017 Amtr-Chr8:107879251 dispersed
Amtr Amtr-Chr8:107879251 Amtr10g03947 Amtr-Chr10:91918608 dispersed
Amtr Amtr-Chr1:69181835 Amtr08g04017 Amtr-Chr8:107879251 wgd
Amtr Amtr-Chr7:107875731 Amtr08g04017 Amtr-Chr8:107879251 wgd