Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amtr08g04018 | ATGGGGTGTGCAGTTTCTGTGTACAAAGTCGGAGGCAATAAGAAGCAGATGAAGATCCCTGTGGTAACCGTGTTTGTACCTTCGGTTCGTGTTCCTGTTAACTCTAACTTTCAAAAGCCTCTTAAAGGACTTGTTCCTAAGGAGCTTACTGATCGACTCACTTCTTTTCGGAATCAAATTGCTCTTCTCGCCCAAGAAACTGATGTTTCAGCTGCTCCTGAAGTGCTACGTGCATTAGAGGAATACTTGTCGCTGTTAGTTGGCCTCACCGATCAAGAACTTGGATTTAGAGAGCTGATTGAATTCAAATGGAAAAGTTTAGACGACGGACGACAAGACATAAGTGTTGCTGATTCCTGGTTCGAATTACTATCCGTTGTTCATATGATGGCTATGCTGACATTAATGGAGGCGAATTCAAAATTGATTCCTGATCAAACTGTTTCTAGTGAAACAGTTGAATCTATAGATGATATAGGGTCTGCGGTTGACTTATTGGTGAAGGCAGCAGGGTACCTGCAATTCTGTCTTCATGAAATTCTTGTCCATATTCCGCCTCATATAAAGATGAAGTTGCCTATAGATTTGCAGGAGAATGTACTCGAGGCTACTTACATTCAAGCACTAGGACAGGGAACAGAAATGCAGCTTGCTTCTGCCGTTGAATGCAAAAACGCCACTTTATCTGTTAAAAGAAGACTAGCATGCGAGCAATTAAGTTATTTCAGTCAGGCACACTACTGCTTGTCAACATGTGACAACCTTAACGGATATGGAAAGAAACATCTTTCATTTATCAAATGGAAGTACCTAGAAGCAAAGGCTGCAGCATATTATTACCATGGTCTGATCACAGACAAGGGTACTGAACCATCCTGCCACATCACTGCAGTGTGTTGTTTTCTTGCTGCTGAAGAAATTCTAACAGAGAGCAAGAAGGCATGCTTAAACTTTTGCTTAACTGCTCCCATAACAAGGGCTCCGACTGCATGGGGTGCTATGAAACATTTGAATAAGAAAATTCCTGAAACCGCCGCTAAAAAGTCTCAGATGTACGCCTACCTGTTAGAGGAAGAAAAGAGTCTAGAGGTGTTGCCGGAACTGCCTGAATTTGAGTTGTCATTAAAAGCAGACGAATTCCAAATGCCGGATAAGGATGCAGCATGGGAGAGTGAAAAATGGAAAATCCCTAATCAAACACTTAAAACTCATTTAACAGATGATGAAGAAGATGATAAATGA | 1242 | 41.47 | MGCAVSVYKVGGNKKQMKIPVVTVFVPSVRVPVNSNFQKPLKGLVPKELTDRLTSFRNQIALLAQETDVSAAPEVLRALEEYLSLLVGLTDQELGFRELIEFKWKSLDDGRQDISVADSWFELLSVVHMMAMLTLMEANSKLIPDQTVSSETVESIDDIGSAVDLLVKAAGYLQFCLHEILVHIPPHIKMKLPIDLQENVLEATYIQALGQGTEMQLASAVECKNATLSVKRRLACEQLSYFSQAHYCLSTCDNLNGYGKKHLSFIKWKYLEAKAAAYYYHGLITDKGTEPSCHITAVCCFLAAEEILTESKKACLNFCLTAPITRAPTAWGAMKHLNKKIPETAAKKSQMYAYLLEEEKSLEVLPELPEFELSLKADEFQMPDKDAAWESEKWKIPNQTLKTHLTDDEEDDK | 413 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amtr08g04018 | 413 | SMART | BRO1-2 | 23 | 401 | IPR004328 | - | |
| Amtr08g04018 | 413 | CDD | BRO1-Alix-like | 10 | 376 | - | - | |
| Amtr08g04018 | 413 | Gene3D | alix-aip1 like domains | 36 | 397 | IPR038499 | - | |
| Amtr08g04018 | 413 | ProSiteProfiles | BRO1 domain profile. | 17 | 413 | IPR004328 | - | |
| Amtr08g04018 | 413 | PANTHER | UNCHARACTERIZED | 14 | 403 | IPR038898 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amtr08g04018 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Amtr | Amtr-Chr5:138653601 | Amtr08g04018 | Amtr-Chr8:107889828 | dispersed | |
| Amtr | Amtr-Chr5:142513717 | Amtr08g04018 | Amtr-Chr8:107889828 | dispersed | |
| Amtr | Amtr-Chr1:69178272 | Amtr08g04018 | Amtr-Chr8:107889828 | wgd |