AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr08g04018 ATGGGGTGTGCAGTTTCTGTGTACAAAGTCGGAGGCAATAAGAAGCAGATGAAGATCCCTGTGGTAACCGTGTTTGTACCTTCGGTTCGTGTTCCTGTTAACTCTAACTTTCAAAAGCCTCTTAAAGGACTTGTTCCTAAGGAGCTTACTGATCGACTCACTTCTTTTCGGAATCAAATTGCTCTTCTCGCCCAAGAAACTGATGTTTCAGCTGCTCCTGAAGTGCTACGTGCATTAGAGGAATACTTGTCGCTGTTAGTTGGCCTCACCGATCAAGAACTTGGATTTAGAGAGCTGATTGAATTCAAATGGAAAAGTTTAGACGACGGACGACAAGACATAAGTGTTGCTGATTCCTGGTTCGAATTACTATCCGTTGTTCATATGATGGCTATGCTGACATTAATGGAGGCGAATTCAAAATTGATTCCTGATCAAACTGTTTCTAGTGAAACAGTTGAATCTATAGATGATATAGGGTCTGCGGTTGACTTATTGGTGAAGGCAGCAGGGTACCTGCAATTCTGTCTTCATGAAATTCTTGTCCATATTCCGCCTCATATAAAGATGAAGTTGCCTATAGATTTGCAGGAGAATGTACTCGAGGCTACTTACATTCAAGCACTAGGACAGGGAACAGAAATGCAGCTTGCTTCTGCCGTTGAATGCAAAAACGCCACTTTATCTGTTAAAAGAAGACTAGCATGCGAGCAATTAAGTTATTTCAGTCAGGCACACTACTGCTTGTCAACATGTGACAACCTTAACGGATATGGAAAGAAACATCTTTCATTTATCAAATGGAAGTACCTAGAAGCAAAGGCTGCAGCATATTATTACCATGGTCTGATCACAGACAAGGGTACTGAACCATCCTGCCACATCACTGCAGTGTGTTGTTTTCTTGCTGCTGAAGAAATTCTAACAGAGAGCAAGAAGGCATGCTTAAACTTTTGCTTAACTGCTCCCATAACAAGGGCTCCGACTGCATGGGGTGCTATGAAACATTTGAATAAGAAAATTCCTGAAACCGCCGCTAAAAAGTCTCAGATGTACGCCTACCTGTTAGAGGAAGAAAAGAGTCTAGAGGTGTTGCCGGAACTGCCTGAATTTGAGTTGTCATTAAAAGCAGACGAATTCCAAATGCCGGATAAGGATGCAGCATGGGAGAGTGAAAAATGGAAAATCCCTAATCAAACACTTAAAACTCATTTAACAGATGATGAAGAAGATGATAAATGA 1242 41.47 MGCAVSVYKVGGNKKQMKIPVVTVFVPSVRVPVNSNFQKPLKGLVPKELTDRLTSFRNQIALLAQETDVSAAPEVLRALEEYLSLLVGLTDQELGFRELIEFKWKSLDDGRQDISVADSWFELLSVVHMMAMLTLMEANSKLIPDQTVSSETVESIDDIGSAVDLLVKAAGYLQFCLHEILVHIPPHIKMKLPIDLQENVLEATYIQALGQGTEMQLASAVECKNATLSVKRRLACEQLSYFSQAHYCLSTCDNLNGYGKKHLSFIKWKYLEAKAAAYYYHGLITDKGTEPSCHITAVCCFLAAEEILTESKKACLNFCLTAPITRAPTAWGAMKHLNKKIPETAAKKSQMYAYLLEEEKSLEVLPELPEFELSLKADEFQMPDKDAAWESEKWKIPNQTLKTHLTDDEEDDK 413
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr08g04018 413 SMART BRO1-2 23 401 IPR004328 -
Amtr08g04018 413 CDD BRO1-Alix-like 10 376 - -
Amtr08g04018 413 Gene3D alix-aip1 like domains 36 397 IPR038499 -
Amtr08g04018 413 ProSiteProfiles BRO1 domain profile. 17 413 IPR004328 -
Amtr08g04018 413 PANTHER UNCHARACTERIZED 14 403 IPR038898 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr08g04018 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr5:138653601 Amtr08g04018 Amtr-Chr8:107889828 dispersed
Amtr Amtr-Chr5:142513717 Amtr08g04018 Amtr-Chr8:107889828 dispersed
Amtr Amtr-Chr1:69178272 Amtr08g04018 Amtr-Chr8:107889828 wgd