AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr08g04034 ATGGCGGCAGATAAGCTGAATAAGCGTTCTAAGGTAAACAATGGAATTTGTCGAACATCTTGGGAGATACAAAAAGTGAAAAAGAAAAAACATCCTCATTATGATTTAAATACAAAATCACGTATTTGTCTCGAGTGGGATGACAAGAAGGAATCTGTTGTATCTAAGAAGGAGCAGATAAGTATTGCACAACGAGAGTTGACCCCGTTTCTTCCTTTTGTTGCGCATCACCAAAATGTTATTGGTGATGTCTTTGCAGCTCCTCCTGAATTATTCGAACTCAATAACTTGACCGGTTCGCTATCTTATGAGGTATGGCAAACTCATTTGTCTGATCAAGAAAGAGAGTTTCTTACCCAGTTTCTTCCTGAAGGGGCTGAGCCACATGCAGTTGTTCATGAATTGTTAGCTGGGAACAATATAAATTTTGGAAATCCATTGCAAAAATGGGGTGCTTCTATTTGCTCAGGTGATTATCATCCTGATGCCATTCTCCGTCAAGAACAACATAACAAGGCTAATAAAGTAGCATATTATTCAGAATTGCAGGAATATCATACTAAAATGATAAGGAGTCTCCAATCATGGAAGGAAACATGGACAATAAGCATGAATCCAGAACATTCTATGCAAAAGATACCAAGGCCCAAAAGGGATTTTCATAAAAGTGGGTCGTCACATGAGTTTGACTTACAAAATGGTCCACAACATGATTTGTGTGTAACATCTGGTTCTTGTTCATGGAATGCTGATGATAAATCATGCAATAGCGACAGCCCTGAGGCCCGAGATCTATCAGCTAGCAACGGAGAAACATTAGTGAGTGCTTCTAGGACAGATTTGGGGAACAAATTTTACAATTCACCAGGTGAGAGATCGGTAGCAAGACCTAGAAAAGGAGATAAATTACACAAGCTCAATGTAGAGAGTGTTGATGGTGCCAAATATATGTCATATATCAAGGTTAGCAAGGAGCAGCACGAACGAGTTAAAAGCAGTATGAAACAGTCTAACACCAGCATTCAACCACGGTCTCTTAATCTTGTTTTGGGAAATATTGATGGTTTTCGTGTTCAACCGTATGAACTGTTCGAGGAAGAAGAGAGACAGAAGTTGCATGATCACTGGTTGCATTTGGCAAAGAAAGATCTTCCTGCTGGCTTTGAGAATTGGAAAAGTTGGCGATCTGCCAAGTGGCAATTGACAATGTCTTTGAGGAAAGAAATGGAAGATAAATGGAAGTCAAATGACGGGCCTGTTTTGAATTTGTATAATAATCAGGACGACGAGTTCATAACTGATGGTCAAGATGAAGAGCTAGAGCAATCGAGTGAAGAGCAACATGACGGTGAAGAAACGAATGATGCACTTTTAATCGCATTAGAGGAGAACATGGAACAGAATGATATTTCAGTATTTCGGTCAGAAGCCGATCTTAATGCAGAAAATCATGACGCTACAAAGAACTCTAGTCAAGATTATACAGAAAATCGTGATGTTACAAACAAGTCTAGTCCAGATTATGCCAAAAATCATGATACTACAAACAACTCTAGTCCAGATTATGCCGAAAATCATGATGATACAAACAAGTCTAGTCAAGATTACGCAGAAAATCATGATGCTACAATCAAGTCTAGTCAAGATTACGCAGAAAATCATGATGCTACAAACAAGTCTAGTCAAGATTCCGGTCAACACCAAAACTTCTGTCCCGTGCCCATCAACACCAACAGTGATGCTATAACAGAATCAGATGCTTTTCCTTCTAATCTAGTTGCTTATCCTGAAAGCATAAATCATGCAGCTGCTTCTGTTAGTGAACAGTTTCCTCTGCACTCTGATGCCACTGAAATATGGCCGCTAGCTCCCCTACCGAATGTGTACTACCATCAACCTACATCTGTAAACCAAGATTACCCTTCTGTTAGTCAACCAACTTTTCTCAACAGACGATCTGACAGCGGAGATTCTTTCTTTAATCCTTATGCTAGTCAAGACCGTAACGAGTTACCATTGCATTCACTTTACAAAGATCCTGTGAATTCTAACTATCTGGGAACCAGTCAATTTTCCAGAAATTTAAGTTTGCCATTATTCTCAGATCCAAGACTAAACATTCAACAAAACATATACACAGACGGAGCGGGTCGGTTTCCAATTCCAAGGGAAGAACCCCTGTTGCCACTGGATCAGGTTCAGGGTTGGCCCGGGACTGGCATTGTTAACCTGCCAATGTCAGCGCCGTCCCATCATCGGTTAAGTCAAAACTGGTTTTCTCATGACGAGGTGGCACGCGATGGGTGGTCAGGTAGTGTAGTTCCAAACCATGACATCAGCACTGGTGGTCAGGCGGTTGATGAGAGCTTATATAGCGTGTTATCCGAGTGTAACGGCTTGCGCTCGGGTGTTCATTATGGTTCAACTGAGATTATGCAGTCTGGAAACTTTGTAGAGGTTGGACGTGAATCGGTTATGCCTACAAGCACCAATGGCGTACCATCTCGGGCCGCTAGAGGGCCGGGCCTTAATTACATGAGTGGCAATGAAGCTCAGTTAGGATGGATGAACCTGCCAGGTTCATTGCAGGATAGTGGGGGGAAACCATTTGCAAGGTTATGGAATGATAGAAATTTAAGGTGA 2643 41.39 MAADKLNKRSKVNNGICRTSWEIQKVKKKKHPHYDLNTKSRICLEWDDKKESVVSKKEQISIAQRELTPFLPFVAHHQNVIGDVFAAPPELFELNNLTGSLSYEVWQTHLSDQEREFLTQFLPEGAEPHAVVHELLAGNNINFGNPLQKWGASICSGDYHPDAILRQEQHNKANKVAYYSELQEYHTKMIRSLQSWKETWTISMNPEHSMQKIPRPKRDFHKSGSSHEFDLQNGPQHDLCVTSGSCSWNADDKSCNSDSPEARDLSASNGETLVSASRTDLGNKFYNSPGERSVARPRKGDKLHKLNVESVDGAKYMSYIKVSKEQHERVKSSMKQSNTSIQPRSLNLVLGNIDGFRVQPYELFEEEERQKLHDHWLHLAKKDLPAGFENWKSWRSAKWQLTMSLRKEMEDKWKSNDGPVLNLYNNQDDEFITDGQDEELEQSSEEQHDGEETNDALLIALEENMEQNDISVFRSEADLNAENHDATKNSSQDYTENRDVTNKSSPDYAKNHDTTNNSSPDYAENHDDTNKSSQDYAENHDATIKSSQDYAENHDATNKSSQDSGQHQNFCPVPINTNSDAITESDAFPSNLVAYPESINHAAASVSEQFPLHSDATEIWPLAPLPNVYYHQPTSVNQDYPSVSQPTFLNRRSDSGDSFFNPYASQDRNELPLHSLYKDPVNSNYLGTSQFSRNLSLPLFSDPRLNIQQNIYTDGAGRFPIPREEPLLPLDQVQGWPGTGIVNLPMSAPSHHRLSQNWFSHDEVARDGWSGSVVPNHDISTGGQAVDESLYSVLSECNGLRSGVHYGSTEIMQSGNFVEVGRESVMPTSTNGVPSRAARGPGLNYMSGNEAQLGWMNLPGSLQDSGGKPFARLWNDRNLR 880
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr08g04034 880 MobiDBLite consensus disorder prediction 479 534 - -
Amtr08g04034 880 CDD DEUBAD-NFRKB 90 196 - -
Amtr08g04034 880 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 88 199 IPR044867 -
Amtr08g04034 880 MobiDBLite consensus disorder prediction 211 226 - -
Amtr08g04034 880 PANTHER NFRKB-RELATED 706 875 IPR024867 GO:0031011(InterPro)
Amtr08g04034 880 MobiDBLite consensus disorder prediction 484 523 - -
Amtr08g04034 880 MobiDBLite consensus disorder prediction 551 572 - -
Amtr08g04034 880 MobiDBLite consensus disorder prediction 209 234 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr08g04034 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr1:69026643 Amtr08g04034 Amtr-Chr8:108141227 wgd