AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amtr09g02805 | ATGTCCAACAACGACAAGGAACGAGAAACTCATGTTTACATGGCCAAGCTCGCAGAACAAGCCGAGCGTTACGAAGAGATGGTTGAATGTATGAAGAGTGTTGCAAAACTAAACGTTGAACTTACTGTCGAAGAGCGCAACCTGCTTTCAGTTGGATACAAGAATGTGATTGGCGCAAGGAGGGCATCTTGGCGCATTATGTCGTCAATTGAACAAAAGGAAGAATCAAAAGGAAATGAAAGCAATGTTACCCTTATTAAGGGCTATTGCAAAAAGGTTGAAGATGAGCTTTCCAAAATTTGCAGCGACATTCTTGAAATAATCGATAAGCATCTCATACCCTCTTCTGGCTCGGGGGAAGCTACTGTTTTTTACCACAAGATGAAAGGTGATTACTATCGGTACCTTGCTGAATTCAAGACAGACCAAGAAAGGAAAGATGCTGCCGAACAGTCATTGAAGGGCTACGAGGCGGCTGCTGCTGCTGCAAACACAGAACTCCCTTCAACACACCCTATTCGTCTCGGTTTGGCACTCAACTTCTCAGTGTTTTACTATGAAATTATGAATTCCCCAGAGAGGGCCTGTCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCTGACCTGGACTCCTTAAGTGAAGAATCTTACAAGGACAGCACCTTGATCATGCAGCTCTTGAGAGATAACCTCACTCTTTGGACCTCTGATTTGCCTGAGGACGCAGGTGACGAAAACCAGCCCAAGGGTGAAGAATCCAAACCAGCGGAACCAGAGGTGAAGCAGCAGTAG | 795 | 45.03 | MSNNDKERETHVYMAKLAEQAERYEEMVECMKSVAKLNVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNESNVTLIKGYCKKVEDELSKICSDILEIIDKHLIPSSGSGEATVFYHKMKGDYYRYLAEFKTDQERKDAAEQSLKGYEAAAAAANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIADLDSLSEESYKDSTLIMQLLRDNLTLWTSDLPEDAGDENQPKGEESKPAEPEVKQQ | 264 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amtr09g02805 | 264 | SUPERFAMILY | 14-3-3 protein | 7 | 238 | IPR036815 | - | |
| Amtr09g02805 | 264 | Gene3D | - | 1 | 248 | IPR036815 | - | |
| Amtr09g02805 | 264 | Coils | Coil | 14 | 34 | - | - | |
| Amtr09g02805 | 264 | MobiDBLite | consensus disorder prediction | 237 | 264 | - | - | |
| Amtr09g02805 | 264 | PRINTS | 14-3-3 protein zeta signature | 40 | 69 | IPR000308 | - | |
| Amtr09g02805 | 264 | PRINTS | 14-3-3 protein zeta signature | 209 | 238 | IPR000308 | - | |
| Amtr09g02805 | 264 | PRINTS | 14-3-3 protein zeta signature | 120 | 142 | IPR000308 | - | |
| Amtr09g02805 | 264 | PRINTS | 14-3-3 protein zeta signature | 182 | 208 | IPR000308 | - | |
| Amtr09g02805 | 264 | PRINTS | 14-3-3 protein zeta signature | 89 | 113 | IPR000308 | - | |
| Amtr09g02805 | 264 | PRINTS | 14-3-3 protein zeta signature | 155 | 181 | IPR000308 | - | |
| Amtr09g02805 | 264 | FunFam | 14-3-3 protein epsilon | 3 | 249 | - | - | |
| Amtr09g02805 | 264 | Coils | Coil | 146 | 166 | - | - | |
| Amtr09g02805 | 264 | SMART | 1433-4 | 8 | 249 | IPR023410 | - | |
| Amtr09g02805 | 264 | PIRSF | 14-3-3 | 2 | 248 | IPR000308 | - | |
| Amtr09g02805 | 264 | MobiDBLite | consensus disorder prediction | 243 | 264 | - | - | |
| Amtr09g02805 | 264 | Pfam | 14-3-3 protein | 14 | 236 | IPR023410 | - | |
| Amtr09g02805 | 264 | PANTHER | 14-3-3 PROTEIN | 7 | 241 | IPR000308 | GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER) | |
| Amtr09g02805 | 264 | ProSitePatterns | 14-3-3 proteins signature 1. | 46 | 56 | IPR023409 | - | |
| Amtr09g02805 | 264 | ProSitePatterns | 14-3-3 proteins signature 2. | 218 | 237 | IPR023409 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amtr09g02805 | K06630 | 14-3-3 protein epsilon |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Amtr | Amtr-Chr8:33963722 | Amtr09g02805 | Amtr-Chr9:74136570 | dispersed | |
| Amtr | Amtr-Chr9:24046695 | Amtr09g02805 | Amtr-Chr9:74136570 | dispersed | |
| Amtr | Amtr-Chr9:74136570 | Amtr09g03273 | Amtr-Chr9:84551805 | dispersed | |
| Amtr | Amtr-Chr10:3358498 | Amtr09g02805 | Amtr-Chr9:74136570 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Amtr01g07036 | WGDA | 1 | 248 | 14-3-3 family | AT2G42590 | 70.565 | 1.08e-129 | 366.0 | |
| Amtr01g07052 | . | 10 | 266 | 14-3-3 family | AT1G35160 | 84.496 | 8.83e-162 | 447.0 | |
| Amtr01g08646 | ACH | 3 | 257 | 14-3-3 family | AT3G02520 | 87.451 | 4.96e-164 | 453.0 | |
| Amtr01g09153 | . | 2 | 256 | 14-3-3 family | AT1G78300 | 87.109 | 1.37e-163 | 451.0 | |
| Amtr02g04103 | ACH | 1 | 263 | 14-3-3 family | AT2G42590 | 77.186 | 1.29e-150 | 419.0 | |
| Amtr02g07917 | ACH,WGDA | 1 | 257 | 14-3-3 family | AT2G42590 | 77.432 | 3.97e-149 | 415.0 | |
| Amtr03g03272 | WGDA | 7 | 205 | 14-3-3 family | AT4G09000 | 77.5 | 3.80e-113 | 322.0 | |
| Amtr05g00935 | . | 1 | 247 | 14-3-3 family | AT5G65430 | 83.858 | 1.59e-160 | 443.0 | |
| Amtr05g05260 | . | 1 | 247 | 14-3-3 family | AT5G10450 | 84.211 | 1.22e-157 | 436.0 | |
| Amtr06g03148 | . | 3 | 254 | 14-3-3 family | AT3G02520 | 88.095 | 1.60e-165 | 457.0 | |
| Amtr06g05298 | WGDA | 6 | 263 | 14-3-3 family | AT2G42590 | 77.22 | 5.89e-147 | 410.0 | |
| Amtr07g00786 | WGDA | 6 | 257 | 14-3-3 family | AT2G42590 | 77.075 | 6.69e-145 | 405.0 | |
| Amtr07g01270 | ACH,WGDA | 1 | 263 | 14-3-3 family | AT2G42590 | 75.665 | 1.96e-149 | 416.0 | |
| Amtr07g05800 | ACH | 2 | 252 | 14-3-3 family | AT5G38480 | 87.649 | 8.96e-168 | 462.0 | |
| Amtr08g01541 | . | 3 | 258 | 14-3-3 family | AT1G78300 | 86.328 | 9.29e-164 | 452.0 | |
| Amtr09g01016 | . | 9 | 128 | 14-3-3 family | AT4G09000 | 80.165 | 5.60e-66 | 199.0 | |
| Amtr09g02805 | . | 4 | 264 | 14-3-3 family | AT1G26480 | 83.525 | 9.28e-163 | 450.0 | |
| Amtr09g03273 | . | 104 | 257 | 14-3-3 family | AT2G42590 | 74.194 | 3.84e-78 | 231.0 | |
| Amtr10g00176 | . | 6 | 256 | 14-3-3 family | AT1G26480 | 85.657 | 1.77e-163 | 452.0 |