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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr09g02816 ATGGCTCATTTGGGATCAAACAAAAACAGAGGGGAGGTGAGAGTTCATGAAAGTTTAGATGAACTCAGTACGGATTTGGCTGATTATATAGCGGAATTATCGGAGGTGTCGGTTAAAGAACGCGGCTTTTTCGCCATTGCTTTGTCGGGTGGCTCCATCATTAGCTTGATGAGGAATCTGTGTGGAGCTCCTTATAACAAGACTGTTGATTGGTCAAAATGGTATATATTTTGGGCGGATGAACGAGTGGTTGCCAAGAATCATGTTGATAGCAACTATAAGCTTGCTAAAGATCATCTTTTGTCTAAGTTGCCTATAGTTCCTAGCCATGTACATTCCATCAACGATTCTCTAACTGCAGAAGAGGCTGCAAATGAATACGAGTTTGTGATCAGGCAACTAGTCAGGACCCGTGTGGTCAACGTGTCTGAGGTCAGCGACTGCCCAAAGTTTGACTTGATCCTTCTAGGGATGGGCCCGGATGGACATGTGGCATCTTTATTCCCTAATCATTCGGCTCTTGAAGAAAAGAACGAATGGGTGACATTTATCACCACTTCCCCTGAGCCTCCGCCCGAAAGAATCACTTTCACGCTGCCTGTTATCAACTCTGCCGCCAATGTGGCGGTGGTGGTGACAGGTGGTGGGAAAGCGGAGGCTACCCTGCTAGCGATAGGTGACGTGGGACCTGAGTGTACGGTGTTGCCAGCTAGGATGATCGAACCAACCGTAGGGAAACTGGTGTGGTTTTTGGATAACCAGGCTGCCTCAAAGCTTAAGGGCTTTTCTCAATTTTACTAG 801 46.94 MAHLGSNKNRGEVRVHESLDELSTDLADYIAELSEVSVKERGFFAIALSGGSIISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEFVIRQLVRTRVVNVSEVSDCPKFDLILLGMGPDGHVASLFPNHSALEEKNEWVTFITTSPEPPPERITFTLPVINSAANVAVVVTGGGKAEATLLAIGDVGPECTVLPARMIEPTVGKLVWFLDNQAASKLKGFSQFY 266
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr09g02816 266 CDD 6PGL 20 251 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Amtr09g02816 266 NCBIfam 6-phosphogluconolactonase 15 259 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Amtr09g02816 266 Gene3D - 8 262 - -
Amtr09g02816 266 FunFam Probable 6-phosphogluconolactonase 8 260 - -
Amtr09g02816 266 PANTHER 6-PHOSPHOGLUCONOLACTONASE 2 260 IPR039104 -
Amtr09g02816 266 Coils Coil 19 39 - -
Amtr09g02816 266 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 249 IPR006148 GO:0005975(InterPro)
Amtr09g02816 266 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 260 IPR037171 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr09g02816 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
13326 Amtr09g02816 Amtr10g04263
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
237046 Amtr Amtr09g02816 Amtr-Chr9:74330386 Amtr09g04901 Amtr-Chr9:114015726
292522 Amtr Amtr10g04263 Amtr-Chr10:99038935 Amtr09g02816 Amtr-Chr9:74330386
303743 Amtr Amtr02g01396 Amtr-Chr2:34231703 Amtr09g02816 Amtr-Chr9:74330386