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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr09g02821 ATGCCTACTTTAACAAAGCTATACTCGATGAAAGAAGCTTCCGAGCACAATACAGCCAGTGATTGCTGGATTGTTGTCGACGGCAAGGTTTATGATGTGTCATCATATATGGAAGAACACCCAGGCGGTGATGATGTCCTCCTACAGGTTACAGGGAAAGATGCGACAGAAGAATTTGAAGACGCGGGCCATAGCAAGACTGCTAGGGAACTCATGGAAACCTTCTGTGTTGGTGAGCTGGACCCCTCGGACATCCCTCAACTTGAAGTCGTCTCGGAGAAACAAGAAAGTTACGTACCTGAGAAACTGGTTAGCCTAACTAAGCAATACTGGGCGGCTCCGGTGGCAGTTGTTGGCATATCGGTGGTGGTCACCTTCTTGTACTTACGCAACAAGTAG 399 48.12 MPTLTKLYSMKEASEHNTASDCWIVVDGKVYDVSSYMEEHPGGDDVLLQVTGKDATEEFEDAGHSKTARELMETFCVGELDPSDIPQLEVVSEKQESYVPEKLVSLTKQYWAAPVAVVGISVVVTFLYLRNK 132
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr09g02821 132 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 4 89 IPR036400 -
Amtr09g02821 132 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Amtr09g02821 132 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Amtr09g02821 132 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Amtr09g02821 132 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Amtr09g02821 132 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Amtr09g02821 132 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Amtr09g02821 132 PANTHER CYTOCHROME B5 4 127 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Amtr09g02821 132 FunFam Cytochrome b5 type B 3 85 - -
Amtr09g02821 132 SMART Cyt-b5-2 8 81 IPR001199 -
Amtr09g02821 132 Gene3D - 3 86 IPR036400 -
Amtr09g02821 132 Pfam Cytochrome b5-like Heme-Steroid binding domain 10 81 IPR001199 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr09g02821 K23490 cytochrome b5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
237049 Amtr Amtr09g02821 Amtr-Chr9:74404903 Amtr09g04900 Amtr-Chr9:114008652
267882 Amtr Amtr09g02821 Amtr-Chr9:74404903 Amtr04g01077 Amtr-Chr4:16989410
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Amtr02g05177 ACH 11 126 NADPH P450 reductases gene family AT5G53560 55.372 2.42e-45 142.0
Amtr03g00452 . 38 273 NADPH P450 reductases gene family AT5G17770 38.76 2.48e-49 174.0
Amtr03g01294 . 37 102 NADPH P450 reductases gene family AT5G48810 56.061 4.82e-21 78.2
Amtr03g06451 . 203 273 NADPH P450 reductases gene family AT5G17770 31.507 3.95e-09 49.7
Amtr03g06453 . 32 273 NADPH P450 reductases gene family AT5G17770 36.09 8.82e-47 167.0
Amtr04g01077 ACH,WGDA 5 133 NADPH P450 reductases gene family AT2G32720 72.868 1.11e-71 209.0
Amtr04g01262 ACH,WGDA 31 281 NADPH P450 reductases gene family AT5G17770 82.143 6.43e-159 441.0
Amtr04g06261 . 6 124 NADPH P450 reductases gene family AT5G48810 44.961 2.97e-36 120.0
Amtr05g00467 . 1 127 NADPH P450 reductases gene family AT5G53560 56.25 2.52e-50 155.0
Amtr05g00468 ACH 1 130 NADPH P450 reductases gene family AT5G53560 56.154 9.08e-45 140.0
Amtr05g00469 . 1 128 NADPH P450 reductases gene family AT5G53560 54.412 1.60e-53 163.0
Amtr05g01223 . 31 281 NADPH P450 reductases gene family AT5G17770 78.486 2.10e-148 414.0
Amtr06g02368 ACH,WGDA 30 281 NADPH P450 reductases gene family AT5G17770 83.73 6.11e-162 449.0
Amtr06g02375 . 6 83 NADPH P450 reductases gene family AT1G26340 38.462 1.52e-14 66.2
Amtr06g02473 ACH,WGDA 5 133 NADPH P450 reductases gene family AT2G32720 72.093 1.61e-71 208.0
Amtr06g05346 . 1 134 NADPH P450 reductases gene family AT5G53560 55.556 3.21e-49 152.0
Amtr06g05347 . 1 134 NADPH P450 reductases gene family AT5G53560 54.074 1.49e-50 155.0
Amtr09g01952 . 6 85 NADPH P450 reductases gene family AT1G26340 37.5 1.71e-14 65.9
Amtr09g02753 . 6 85 NADPH P450 reductases gene family AT1G26340 37.5 1.85e-14 65.9
Amtr09g02821 . 1 134 NADPH P450 reductases gene family AT1G26340 62.687 8.23e-60 179.0
Amtr09g04900 ACH 1 133 NADPH P450 reductases gene family AT5G53560 72.932 5.50e-72 210.0
Amtr11g03411 . 39 281 NADPH P450 reductases gene family AT5G17770 41.379 6.69e-65 204.0
Amtr12g00643 . 31 281 NADPH P450 reductases gene family AT5G17770 72.908 3.97e-138 389.0