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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr10g04195 ATGTCAGACAAAAGAAACATACAAGACCAAAAGCGTCGACAACTGGCAGAAAAGTTCGAGCTAAGGAGAAAGCTCTACAAAGCGTTTACAAAGGACACAGATCTCCCAAACGATGTGCGTGAAAAAAACCGGTGCAAGTTAGCCGCGTTGCCACGTAACAGCTCGTTCACACGTGTCATGAACCGGTGTGTCTTCACTGGTCGTGCTCATGCTGTTTATAAAATGTTTCGTGTTTCTCGTATCGTGTTTCGTGATCTCGCTTCCAAAGGTTTGTTGCAGGGTGTTAAAAAGGCGTCCTGGTAA 303 45.54 MSDKRNIQDQKRRQLAEKFELRRKLYKAFTKDTDLPNDVREKNRCKLAALPRNSSFTRVMNRCVFTGRAHAVYKMFRVSRIVFRDLASKGLLQGVKKASW 100
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr10g04195 100 Gene3D - 1 90 - -
Amtr10g04195 100 ProSitePatterns Ribosomal protein S14 signature. 62 84 IPR018271 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Amtr10g04195 100 PANTHER 30S RIBOSOMAL PROTEIN S14 2 100 IPR001209 GO:0003735(InterPro)|GO:0003735(PANTHER)|GO:0005840(InterPro)|GO:0006412(PANTHER)|GO:0006412(InterPro)|GO:0015935(PANTHER)
Amtr10g04195 100 FunFam 30S ribosomal protein S14 1 90 - -
Amtr10g04195 100 Pfam Ribosomal protein S14p-S29e 46 99 IPR001209 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Amtr10g04195 100 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 100 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr10g04195 K02954 small subunit ribosomal protein S14