AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amtr10g04218 | ATGGCTGCTTTCACCACTTTAGGGTTTCTCTTCCTGGGTCTCCTAACCGCCGTCAACGCTGACGGCGGCTGGGTCAACGCTCATGCCACCTTCTACGGCGGTGGCGATGCTGCCGGCACAATGGGTGGTGCATGTGGGTATGGGAATTTATACAGTCAAGGGTACGGTACAAACACAGCAGCATTAAGTACAGCTCTATTCAACAACGGGTTGAGTTGTGGGTCATGTTTCGAAATCAAGTGTGTGAATGACAACAAGTGGTGTTTACCGGGCTCCATTAAGGTGACCGCCACCAACTTCTGCCCACCTAACACCGCCTTACCTAACAACGACGGTGGCTGGTGTAACCCACCTCTCCAACATTTTGACCTCGCTCAACCTGTCTTCCAACATATTGCTCAGTACAAGGCTGGAATTGTTCCTGTTGCTTACAGAAGGGTGCCATGTTTGAGAAGGGGTGGAATTAGGTTCCAAATCAACGGTCATTCATACTTCAATTTGGTGTTAATTACAAATGTTGGTGGTGCGGGTGATGTTCATGCGGTGGCCATCAAAGGGTCAAAGACAGGATGGCAACAAATGTCAAGGAACTGGGGGCAAAATTGGCAATCCAACACTTATTTGAACGGGCAGTCACTATCATTTAAGGTCACCACAAGCGATGGCAAAACTGTGATTTCCAACAACGTGGTCCCTGCTGGTTGGTCGTTCGGGCAGACCTTCACGGGTGCTCAATTCCGTTGA | 744 | 49.6 | MAAFTTLGFLFLGLLTAVNADGGWVNAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIKCVNDNKWCLPGSIKVTATNFCPPNTALPNNDGGWCNPPLQHFDLAQPVFQHIAQYKAGIVPVAYRRVPCLRRGGIRFQINGHSYFNLVLITNVGGAGDVHAVAIKGSKTGWQQMSRNWGQNWQSNTYLNGQSLSFKVTTSDGKTVISNNVVPAGWSFGQTFTGAQFR | 247 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amtr10g04218 | 247 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 42 | 154 | IPR007112 | - | |
| Amtr10g04218 | 247 | FunFam | Expansin | 14 | 150 | - | - | |
| Amtr10g04218 | 247 | Gene3D | - | 13 | 149 | IPR036908 | - | |
| Amtr10g04218 | 247 | SMART | dpbb-1 | 59 | 144 | IPR007112 | - | |
| Amtr10g04218 | 247 | FunFam | Expansin | 154 | 246 | - | - | |
| Amtr10g04218 | 247 | SUPERFAMILY | PHL pollen allergen | 151 | 243 | IPR036749 | - | |
| Amtr10g04218 | 247 | Pfam | Expansin C-terminal domain | 155 | 232 | IPR007117 | - | |
| Amtr10g04218 | 247 | Gene3D | - | 154 | 246 | IPR036749 | - | |
| Amtr10g04218 | 247 | Pfam | Lytic transglycolase | 59 | 144 | IPR009009 | - | |
| Amtr10g04218 | 247 | PRINTS | Expansin signature | 112 | 129 | IPR002963 | GO:0009664(InterPro) | |
| Amtr10g04218 | 247 | PRINTS | Expansin signature | 129 | 142 | IPR002963 | GO:0009664(InterPro) | |
| Amtr10g04218 | 247 | PRINTS | Expansin signature | 229 | 245 | IPR002963 | GO:0009664(InterPro) | |
| Amtr10g04218 | 247 | PRINTS | Expansin signature | 54 | 68 | IPR002963 | GO:0009664(InterPro) | |
| Amtr10g04218 | 247 | PRINTS | Expansin signature | 153 | 165 | IPR002963 | GO:0009664(InterPro) | |
| Amtr10g04218 | 247 | PRINTS | Expansin signature | 200 | 221 | IPR002963 | GO:0009664(InterPro) | |
| Amtr10g04218 | 247 | PRINTS | Expansin signature | 93 | 103 | IPR002963 | GO:0009664(InterPro) | |
| Amtr10g04218 | 247 | PRINTS | Expansin signature | 81 | 92 | IPR002963 | GO:0009664(InterPro) | |
| Amtr10g04218 | 247 | PRINTS | Expansin signature | 165 | 186 | IPR002963 | GO:0009664(InterPro) | |
| Amtr10g04218 | 247 | PRINTS | Expansin-Lol pI family signature | 23 | 38 | IPR007118 | GO:0005576(InterPro) | |
| Amtr10g04218 | 247 | PRINTS | Expansin-Lol pI family signature | 63 | 81 | IPR007118 | GO:0005576(InterPro) | |
| Amtr10g04218 | 247 | PRINTS | Expansin-Lol pI family signature | 41 | 59 | IPR007118 | GO:0005576(InterPro) | |
| Amtr10g04218 | 247 | PRINTS | Expansin-Lol pI family signature | 229 | 243 | IPR007118 | GO:0005576(InterPro) | |
| Amtr10g04218 | 247 | PRINTS | Expansin-Lol pI family signature | 137 | 153 | IPR007118 | GO:0005576(InterPro) | |
| Amtr10g04218 | 247 | PRINTS | Expansin-Lol pI family signature | 191 | 205 | IPR007118 | GO:0005576(InterPro) | |
| Amtr10g04218 | 247 | PANTHER | EXPANSIN-A15 | 6 | 246 | IPR002963 | GO:0009664(InterPro) | |
| Amtr10g04218 | 247 | CDD | DPBB-EXPA-N | 23 | 149 | - | - | |
| Amtr10g04218 | 247 | SUPERFAMILY | Barwin-like endoglucanases | 14 | 172 | IPR036908 | - | |
| Amtr10g04218 | 247 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 164 | 243 | IPR007117 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amtr10g04218 | K20628 | expansin |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Amtr | Amtr-Chr1:80153010 | Amtr10g04218 | Amtr-Chr10:98211176 | dispersed | |
| Amtr | Amtr-Chr2:136488193 | Amtr10g04218 | Amtr-Chr10:98211176 | dispersed | |
| Amtr | Amtr-Chr3:101197218 | Amtr10g04218 | Amtr-Chr10:98211176 | dispersed | |
| Amtr | Amtr-Chr5:11648015 | Amtr10g04218 | Amtr-Chr10:98211176 | dispersed | |
| Amtr | Amtr-Chr6:33161643 | Amtr10g04218 | Amtr-Chr10:98211176 | dispersed | |
| Amtr | Amtr-Chr8:36100176 | Amtr10g04218 | Amtr-Chr10:98211176 | dispersed | |
| Amtr | Amtr-Chr8:134185023 | Amtr10g04218 | Amtr-Chr10:98211176 | dispersed | |
| Amtr | Amtr-Chr9:15672687 | Amtr10g04218 | Amtr-Chr10:98211176 | dispersed | |
| Amtr | Amtr-Chr9:72710550 | Amtr10g04218 | Amtr-Chr10:98211176 | dispersed | |
| Amtr | Amtr-Chr9:90678167 | Amtr10g04218 | Amtr-Chr10:98211176 | dispersed | |
| Amtr | Amtr-Chr9:101530638 | Amtr10g04218 | Amtr-Chr10:98211176 | dispersed | |
| Amtr | Amtr-Chr10:98211176 | Amtr12g01381 | Amtr-Chr12:33286075 | dispersed | |
| Amtr | Amtr-Chr10:98211176 | Amtr04g02836 | Amtr-Chr4:56804751 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Amtr01g02794 | . | 8 | 264 | Expansin gene family | AT3G45970 | 59.387 | 5.70e-104 | 301.0 | |
| Amtr01g02975 | . | 1 | 251 | Expansin gene family | AT5G56320 | 73.228 | 6.72e-141 | 394.0 | |
| Amtr01g04803 | . | 14 | 249 | Expansin gene family | AT4G17030 | 61.603 | 4.51e-110 | 315.0 | |
| Amtr01g07309 | . | 7 | 253 | Expansin gene family | AT2G40610 | 80.162 | 1.17e-148 | 413.0 | |
| Amtr01g07311 | . | 7 | 253 | Expansin gene family | AT2G40610 | 80.162 | 1.17e-148 | 413.0 | |
| Amtr01g07472 | . | 3 | 257 | Expansin gene family | AT2G39700 | 83.529 | 4.96e-164 | 452.0 | |
| Amtr01g07709 | . | 27 | 259 | Expansin gene family | AT2G45110 | 44.444 | 2.77e-68 | 209.0 | |
| Amtr01g08963 | . | 39 | 265 | Expansin gene family | AT3G03220 | 82.379 | 1.63e-146 | 409.0 | |
| Amtr02g00185 | . | 1 | 257 | Expansin gene family | AT2G39700 | 81.154 | 8.79e-158 | 437.0 | |
| Amtr02g00667 | . | 15 | 252 | Expansin gene family | AT1G20190 | 74.79 | 2.26e-137 | 385.0 | |
| Amtr02g04730 | . | 14 | 257 | Expansin gene family | AT2G39700 | 86.885 | 3.52e-163 | 450.0 | |
| Amtr02g04941 | . | 7 | 253 | Expansin gene family | AT2G40610 | 80.162 | 9.06e-149 | 413.0 | |
| Amtr02g06083 | . | 18 | 252 | Expansin gene family | AT1G20190 | 74.894 | 6.64e-137 | 384.0 | |
| Amtr02g07436 | . | 1 | 252 | Expansin gene family | AT2G03090 | 77.165 | 5.74e-143 | 399.0 | |
| Amtr03g01341 | . | 68 | 153 | Expansin gene family | AT2G45110 | 36.957 | 2.51e-08 | 48.9 | |
| Amtr03g01342 | WGDA | 1 | 153 | Expansin gene family | AT2G45110 | 31.25 | 4.59e-10 | 53.9 | |
| Amtr03g01350 | . | 68 | 153 | Expansin gene family | AT2G45110 | 35.87 | 1.15e-08 | 50.1 | |
| Amtr03g01351 | . | 81 | 166 | Expansin gene family | AT1G65680 | 32.609 | 1.38e-07 | 47.0 | |
| Amtr03g01356 | . | 68 | 151 | Expansin gene family | AT2G45110 | 33.708 | 1.15e-06 | 44.3 | |
| Amtr03g01357 | . | 34 | 134 | Expansin gene family | AT4G28250 | 29.907 | 3.06e-06 | 43.1 | |
| Amtr03g04663 | . | 18 | 252 | Expansin gene family | AT2G03090 | 79.574 | 1.08e-142 | 397.0 | |
| Amtr04g01659 | . | 1 | 257 | Expansin gene family | AT2G39700 | 82.101 | 1.31e-160 | 444.0 | |
| Amtr04g02836 | . | 10 | 259 | Expansin gene family | AT2G45110 | 43.426 | 6.83e-69 | 211.0 | |
| Amtr04g02997 | . | 9 | 259 | Expansin gene family | AT2G45110 | 44.841 | 2.36e-69 | 213.0 | |
| Amtr04g03000 | . | 9 | 259 | Expansin gene family | AT2G45110 | 45.059 | 5.21e-69 | 212.0 | |
| Amtr05g00723 | . | 11 | 253 | Expansin gene family | AT2G40610 | 79.424 | 1.39e-142 | 397.0 | |
| Amtr05g05757 | . | 18 | 252 | Expansin gene family | AT1G20190 | 73.617 | 1.95e-131 | 369.0 | |
| Amtr06g00961 | . | 1 | 257 | Expansin gene family | AT2G39700 | 80.545 | 2.23e-160 | 443.0 | |
| Amtr06g01623 | . | 9 | 253 | Expansin gene family | AT2G40610 | 73.469 | 7.45e-140 | 391.0 | |
| Amtr06g02150 | . | 1 | 257 | Expansin gene family | AT2G39700 | 82.101 | 6.62e-161 | 444.0 | |
| Amtr06g05649 | . | 32 | 262 | Expansin gene family | AT1G12560 | 72.727 | 8.51e-128 | 362.0 | |
| Amtr07g00069 | . | 9 | 247 | Expansin gene family | AT4G17030 | 39.516 | 1.28e-57 | 182.0 | |
| Amtr07g01026 | . | 66 | 154 | Expansin gene family | AT4G38210 | 32.258 | 7.06e-07 | 45.1 | |
| Amtr07g03839 | . | 1 | 257 | Expansin gene family | AT2G39700 | 80.545 | 4.17e-159 | 440.0 | |
| Amtr07g04875 | . | 4 | 250 | Expansin gene family | AT1G69530 | 77.733 | 2.61e-138 | 386.0 | |
| Amtr08g01620 | . | 7 | 253 | Expansin gene family | AT2G40610 | 72.065 | 2.88e-136 | 382.0 | |
| Amtr08g01980 | . | 1 | 257 | Expansin gene family | AT2G39700 | 82.101 | 2.07e-161 | 446.0 | |
| Amtr08g04097 | . | 13 | 262 | Expansin gene family | AT1G12560 | 66.797 | 3.75e-125 | 355.0 | |
| Amtr08g05561 | . | 7 | 253 | Expansin gene family | AT2G40610 | 72.065 | 3.84e-139 | 389.0 | |
| Amtr09g00565 | . | 30 | 252 | Expansin gene family | AT2G03090 | 82.143 | 1.50e-138 | 387.0 | |
| Amtr09g02742 | . | 1 | 250 | Expansin gene family | AT1G69530 | 79.2 | 1.80e-144 | 402.0 | |
| Amtr09g03622 | . | 15 | 252 | Expansin gene family | AT1G20190 | 73.529 | 4.59e-137 | 384.0 | |
| Amtr09g04208 | . | 7 | 257 | Expansin gene family | AT2G39700 | 78.884 | 2.91e-149 | 415.0 | |
| Amtr09g04510 | . | 26 | 273 | Expansin gene family | AT1G65680 | 53.2 | 2.02e-94 | 277.0 | |
| Amtr10g02530 | . | 29 | 262 | Expansin gene family | AT4G28250 | 76.271 | 9.65e-139 | 389.0 | |
| Amtr10g02859 | . | 1 | 264 | Expansin gene family | AT3G45970 | 63.396 | 1.89e-117 | 335.0 | |
| Amtr10g04218 | . | 1 | 250 | Expansin gene family | AT1G69530 | 83.6 | 6.50e-154 | 426.0 | |
| Amtr11g00843 | . | 1 | 262 | Expansin gene family | AT1G12560 | 66.667 | 1.23e-128 | 363.0 | |
| Amtr11g00844 | . | 1 | 262 | Expansin gene family | AT1G12560 | 66.418 | 6.24e-129 | 364.0 | |
| Amtr11g02776 | . | 10 | 259 | Expansin gene family | AT2G45110 | 47.692 | 2.48e-72 | 220.0 | |
| Amtr11g03101 | . | 10 | 249 | Expansin gene family | AT4G17030 | 56.846 | 7.72e-102 | 294.0 | |
| Amtr11g04218 | . | 33 | 259 | Expansin gene family | AT3G55500 | 59.649 | 4.19e-97 | 284.0 | |
| Amtr12g01381 | . | 1 | 257 | Expansin gene family | AT2G39700 | 81.712 | 3.62e-163 | 450.0 |