AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr10g04264 ATGAAGGAGCAGATAATCACCGAAGATAAATCAGACGGTCTGGATATTGTATCAATCGGAAAGCTGTACGAAGGTCCATTGGAGAAGAAGTATTGGAGTTCGTCTAGGGGTAAAGACAGGCATCCATATCCAGTTGGATATGTAGCTCTTCGGGTGAATAATGGGATTACCTACAAGATGGCGATCCTTGAGGGACTTAAAGGACCTGAATTTGTGATTAGTTCTACGGATGGGCAATCTTGTTCTGGTCAAACTCCAGATATTGCATGGGAGGGCTTACAAAAGAAGAGCAATGTCCGCATAAAATTTCCGAGAGGGAAGAGATTTGCATGCAAGATAGATGGTGCGGAGCTTTTTGGGTTCAAAAATCCACATGTCATGAGGTTACTGCGGGGATTGAAGGCAAATGTCAGCCAAATCCCACCTAAAGATTTGCCATCTTTGCCCTTTGGCAATGGACAGCCTGAAGGAACACATGAACATCATACAAAACATCCTAATTTGCAAGTGAATTTGGTTAAAATCCAGGGTAAAGAGAAAAAAAGTAATAAACGTAAAGAAAATAATGTGAAATCCGTTAGTGGGCCTGGACCTAAAAGAGAGCGACCTCAAGATTTGACACAAAGGGGTCATGAACCACATTGCAGGCGGAGTTTTGAAGGGAATCATAAAAATGAGATTCCTTCAAGTTCGTCAAATTTGAATGAAAATAATGTAGCTCATTTATCGTCAGCAGAAGGGATGCCGGTTGATTCCCTTATTTTACCTGACCATCTTGAGAAGGAGAAATGTCTTTCTGTCCAAGAACCAATCACTCAAGAAGATGCCAGGTTGTTAAAAGGGCAAGAAAATCATGACTTGTCGATGTTTAGCCACACACCAGGGTTCACTTCCTCAAAAACAGTAGATAAAAAGGGAGACCCACCACTTCAAAAAGAATCACAGATGTTGGACGATGGGGACCTCTATGCACCGGATACTCTGGATCTAACATTAGACAGTACATGCAATTTGGAGGTGGAGATCCCCAAAGAAAGTACATGCACGTTAAATGAGAAGTTAAATTCTTCCCAAATTTTGGTTTCTGAAAAATGTGTAACTGACTCTAATTCAAAAGATGAGATGGTTATTGCTTCTGCTTCTGGAAGTGATCATTCTGAAAAGACTGATTCAGATCCAGTTGGACATGAGATATCCAACTCAATGATGGCATTACTACTTCCGCGAGCTCTTCCTTTGCTTAAGACTTTTTCAAGAAAGAAAAAGAAAAATATTGATGGAATGTTCCAGAAGGAAAGAAAGGAGGTTGACCGATACCCCAGAGATGACCCTCCAGCCAAATCTTCTGAGCTTTTGGAAAAGCTCAGCGGTGAAGTTTACATTACAGACAAACCTTCTGCTGGAAACTTTACATCTGAGAAGCAAAATGAAAGTGTTCTCTTCCCAAGTACAAGTACCGATTCAGCTGTACCTGGTTTAGAAGATTCAACAACTGTTGCACCTGATAGTTTTGAGAATGATCTGTGTGAAATTGTGGATTGCTTCCAGGCTGGGCAAGTTCAAGATGCTGTTAAAGCTGATCAAGATACTTCCAGTACAGATTTATGCATCCGTGAAGGGCACCATCAAGAAGTAGAAGTTACAACTGACAATGTGTACTCTATGCTAACTGTTGATCATGTAGCTCAAAAGGGAATAGAAGGTTTCACAGGGGGAGTTGATGCATCAGTTCCACCGCATCAAGAGGCAGATGGTTTGATTTCAATTTTGCCGGGTCAAAGAATAAGTCAACATGACAAGACTAAAATGTTGCACAGTGATGAGGAAGCTAAAGTGGTGCCCAATGACGAACGAGAGAATATATTTGAACTTTTAGGCTGCTATATGCTTCCAACACCAATTTCAATGGCAATGTTGAAAACAAAAGGGGATGAGATATTTGTATGTGTTTTATGTGGCTATTTGATGGAAAACGACAGGACATTGTTCATTTATAAGGCATCAATTAAAGGAGAAACTAGAGGATGCCCTTCTTTTATTGGTCACACAACAATTATCTCACCAACATCAAGGAACGCATCTGGTAGACAAGTTCTTTTGGATAGTTCAAGTTTACAGCTTACTCCAGACGGAAAATCCCTTGTTTTACTGAACAGTATTAAAGCTCCTTACTGCAGGGAGGGGAGTGTAAACTGTGGGTGTTCAGTGTGTACTTCAGATTGCTTCGAGAAGAATGCAGTAAAAATTGTGCAAGTAAAAGTTGGCTATGTTCGAGTAGTATGCAAACTGCAAACAACTAACAATGTGTGCTCCATTTTAGTTTGCGAACCCAATTATCTTGTTGCTTCTGAAGAGAGTGGAAAAATGAACTTATGGACCATGAACTCATCATGGAGTGCACCAACAGACCAGATCTGTTTGCCAATGTCTGACTGCATGCCTAATTGTATAATTGAGATGAAGAGAATACCAAATTTCCAAGCTCTTATTGTTGGTCACAGCGCATTTGGGGATTTTTGCGTGTGGGATTTAACAAGAAGAACCCTTGTGTCCAAGTTTTCAGCTCCAAGAACTTCATTTCTCCCCTTCATCCCAATCAGTTTATTTAGGTATCCTAGTCAAGCTTTATCCACCTTAGATGCTTGTAGGAAGAAACAAGTTGAAGACATCATGGAAGAAACACAAAGGTGGTCTTTAGAAACAGAGAGCCATAATTCTCTTCCAGTAAATGGAGAAGATCTGTCCCTTGTTCTTTTTGTCTCATCTGTCTCAAATTTTGATCTTTTTGATGAATATCCACATAAAGATTTGGAAGTCAGTCCAGCTGGATCCTGGAGCTTAGCATTGCTGGCCAAAAATAAACTAGTTTCAGAAAATGCTTTGGATCCAAGTGCCACTGTAGTTGGTGCATCATCAGGTTATGGAATCGTAGGTACATGTGATGGTTCTCTTTACATTTGGGAATTATCCACAGGTACCAAGCTCGGTTATCTCAGCCATTGTGCAGGAGCCACGGTATCATGTTTTTTTGCTGATGACTCAGACTCTGGCGTTTTTGCGGTAACTGTTGACGGCAACCAGCTGCTGGTATATGCTCCTGGAACATTGGCAAATAAAAAAACATGA 3126 40.66 MKEQIITEDKSDGLDIVSIGKLYEGPLEKKYWSSSRGKDRHPYPVGYVALRVNNGITYKMAILEGLKGPEFVISSTDGQSCSGQTPDIAWEGLQKKSNVRIKFPRGKRFACKIDGAELFGFKNPHVMRLLRGLKANVSQIPPKDLPSLPFGNGQPEGTHEHHTKHPNLQVNLVKIQGKEKKSNKRKENNVKSVSGPGPKRERPQDLTQRGHEPHCRRSFEGNHKNEIPSSSSNLNENNVAHLSSAEGMPVDSLILPDHLEKEKCLSVQEPITQEDARLLKGQENHDLSMFSHTPGFTSSKTVDKKGDPPLQKESQMLDDGDLYAPDTLDLTLDSTCNLEVEIPKESTCTLNEKLNSSQILVSEKCVTDSNSKDEMVIASASGSDHSEKTDSDPVGHEISNSMMALLLPRALPLLKTFSRKKKKNIDGMFQKERKEVDRYPRDDPPAKSSELLEKLSGEVYITDKPSAGNFTSEKQNESVLFPSTSTDSAVPGLEDSTTVAPDSFENDLCEIVDCFQAGQVQDAVKADQDTSSTDLCIREGHHQEVEVTTDNVYSMLTVDHVAQKGIEGFTGGVDASVPPHQEADGLISILPGQRISQHDKTKMLHSDEEAKVVPNDERENIFELLGCYMLPTPISMAMLKTKGDEIFVCVLCGYLMENDRTLFIYKASIKGETRGCPSFIGHTTIISPTSRNASGRQVLLDSSSLQLTPDGKSLVLLNSIKAPYCREGSVNCGCSVCTSDCFEKNAVKIVQVKVGYVRVVCKLQTTNNVCSILVCEPNYLVASEESGKMNLWTMNSSWSAPTDQICLPMSDCMPNCIIEMKRIPNFQALIVGHSAFGDFCVWDLTRRTLVSKFSAPRTSFLPFIPISLFRYPSQALSTLDACRKKQVEDIMEETQRWSLETESHNSLPVNGEDLSLVLFVSSVSNFDLFDEYPHKDLEVSPAGSWSLALLAKNKLVSENALDPSATVVGASSGYGIVGTCDGSLYIWELSTGTKLGYLSHCAGATVSCFFADDSDSGVFAVTVDGNQLLVYAPGTLANKKT 1041
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr10g04264 1041 SUPERFAMILY WD40 repeat-like 744 1032 IPR036322 GO:0005515(InterPro)
Amtr10g04264 1041 MobiDBLite consensus disorder prediction 202 223 - -
Amtr10g04264 1041 Gene3D - 703 1035 IPR015943 GO:0005515(InterPro)
Amtr10g04264 1041 ProSiteProfiles FYR domain FYRN motif profile. 6 65 IPR003888 GO:0005634(InterPro)
Amtr10g04264 1041 MobiDBLite consensus disorder prediction 291 312 - -
Amtr10g04264 1041 MobiDBLite consensus disorder prediction 428 449 - -
Amtr10g04264 1041 Pfam F-Y rich C-terminus 68 134 IPR003889 GO:0005634(InterPro)
Amtr10g04264 1041 MobiDBLite consensus disorder prediction 144 236 - -
Amtr10g04264 1041 ProSiteProfiles FYR domain FYRC motif profile. 66 146 IPR003889 GO:0005634(InterPro)
Amtr10g04264 1041 Gene3D - 10 137 - -
Amtr10g04264 1041 MobiDBLite consensus disorder prediction 428 453 - -
Amtr10g04264 1041 PANTHER TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 614 1018 IPR040092 GO:0005634(PANTHER)|GO:0051726(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr10g04264 - -