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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00224 ATGAATACTTTAATGTCATTCAAGTTATATTCTTTCTCATCCAATGTTCCACAAACTTCTCCTTCAGTTTCCTTTTCTTCATCCAAATTCTTTCAGACTCTCAAATTTTCCCCACGCCGATACTCATTCCCAAGGATTTATGCATTTTCTAGTAATGATATAAAGGTGGGTTCCAACATTGAGGTAGATGGGTCTCCTTGGAAAGTTATAGAGTTTCTTCATGTGAAGCCTGGTAAAGGGGCTGCTTATGTTAGGACTACACTACGGAATTATATGACAGGAAACTCTGTTGAGAAAACTTTCCGGGCTGGAAGTAAGATTGAACAAGCTGAGATCTCTAAGGAGACGAAACAATTCACATACAAGGACGGTTCACAGTTTGTTTTCATGGATCTGTCTTCATACGAGGAAGTTCGTCTTAACGAGTCAGACATGGGAGATAAGACTAAATGGTTAAAAGAAGGCATGGATTGCAATTTGCTGTTTTGGAAGGGAAAGGTTATCGATTTTGAGGTTCCATTACAGGTTAAAGTAAAAATAGTCGATGTTGATCCCGGTACGAAAGGTGAAGCGGCTCAAGGTGGATCGAAACCAGCCACTGTGGAAACCGGTGCTGTTGTTTATGTTCCATTGTTTGTAGACAGAGATCAAGAAATAATTGTGGATACAAGAACAGGACAGTACGTAAGTCGCGTATGA 699 39.91 MNTLMSFKLYSFSSNVPQTSPSVSFSSSKFFQTLKFSPRRYSFPRIYAFSSNDIKVGSNIEVDGSPWKVIEFLHVKPGKGAAYVRTTLRNYMTGNSVEKTFRAGSKIEQAEISKETKQFTYKDGSQFVFMDLSSYEEVRLNESDMGDKTKWLKEGMDCNLLFWKGKVIDFEVPLQVKVKIVDVDPGTKGEAAQGGSKPATVETGAVVYVPLFVDRDQEIIVDTRTGQYVSRV 232
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00224 232 CDD S1-EF-P-repeat-1 118 173 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Amtr12g00224 232 Pfam Elongation factor P (EF-P) OB domain 118 168 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Amtr12g00224 232 Gene3D - 41 110 IPR014722 -
Amtr12g00224 232 CDD S1-EF-P-repeat-2 176 231 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Amtr12g00224 232 SMART EFP-2 114 168 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Amtr12g00224 232 SUPERFAMILY Translation proteins SH3-like domain 46 108 IPR008991 -
Amtr12g00224 232 ProSitePatterns Elongation factor P signature. 197 216 IPR013852 -
Amtr12g00224 232 FunFam Elongation factor P 111 174 - -
Amtr12g00224 232 FunFam Organellar elongation factor P 42 110 - -
Amtr12g00224 232 NCBIfam elongation factor P 50 232 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Amtr12g00224 232 FunFam Elongation factor P 175 232 - -
Amtr12g00224 232 SUPERFAMILY Nucleic acid-binding proteins 176 232 IPR012340 -
Amtr12g00224 232 Gene3D - 175 232 IPR012340 -
Amtr12g00224 232 Hamap Elongation factor P [efp]. 48 232 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Amtr12g00224 232 Gene3D - 111 173 IPR012340 -
Amtr12g00224 232 PANTHER ELONGATION FACTOR P 20 232 IPR020599 GO:0003746(PANTHER)|GO:0005737(PANTHER)
Amtr12g00224 232 Pfam Elongation factor P, C-terminal 176 231 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Amtr12g00224 232 Pfam Elongation factor P (EF-P) KOW-like domain 50 107 IPR013185 -
Amtr12g00224 232 SMART Elong-fact-P-C-2 176 231 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Amtr12g00224 232 SUPERFAMILY Nucleic acid-binding proteins 112 176 IPR012340 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00224 K02356 elongation factor P
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
228554 Amtr Amtr07g04620 Amtr-Chr7:98162245 Amtr12g00224 Amtr-Chr12:7301463