AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00397 ATGGACTCAACCACACAAGAACTTAAACATAGAACCACCCAAGACCAATCTCCAACCCTTCAAGACAACAATGACAACGTCAATAACATAAGCAACACAAAACCTAAAACCCAACGGCGGACCGCGATCCCTACCCGTGGCATTCGGTCACTAGCTGTAGGGATCGCGATCCCGTTGGCTCTAACCTTAGCCAACATATCCATATTCGGCTGGAACCGGAGTTACCAAGCCATCAGCAAGCCGTTCTGGGTCCCACCGTTATGGGCTCTCCATCTAACATGTTTGGGTTCGGCTTTTGTTATGGGCTTATCGGCTTGGCTTGTTTGGGCCGAGGGTGGGTTTCATAAGAAGCCGGCTGCGATTGGGTTTTATTTGGGTCAGCTTGGGCTGAGCCTGGCTTGGGAGCCGGTGTTTTTTAAGATGGGTGCGGCTAGGTTGGGTTTGTTGGTGTGTTTGGGTCAGATGGCGACTATGTGGTCGTGTTCGAGGATGTTTGGAAGTGTTAACCGGACCGCGGGTGACTTGGTGAAGCTTTGTTTGGTTTGGTCCGGGTTTTTGACGCTTGTGAATTTGTATTTTGTGGTTTGA 588 50.17 MDSTTQELKHRTTQDQSPTLQDNNDNVNNISNTKPKTQRRTAIPTRGIRSLAVGIAIPLALTLANISIFGWNRSYQAISKPFWVPPLWALHLTCLGSAFVMGLSAWLVWAEGGFHKKPAAIGFYLGQLGLSLAWEPVFFKMGAARLGLLVCLGQMATMWSCSRMFGSVNRTAGDLVKLCLVWSGFLTLVNLYFVV 195
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00397 195 FunFam translocator protein 2 47 195 - -
Amtr12g00397 195 CDD TSPO-MBR 51 194 IPR004307 GO:0016020(InterPro)
Amtr12g00397 195 Pfam TspO-MBR family 57 193 IPR004307 GO:0016020(InterPro)
Amtr12g00397 195 MobiDBLite consensus disorder prediction 10 41 - -
Amtr12g00397 195 Gene3D TspO-MBR protein 47 195 IPR038330 -
Amtr12g00397 195 MobiDBLite consensus disorder prediction 1 41 - -
Amtr12g00397 195 PANTHER PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR 38 193 IPR004307 GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00397 K05770 translocator protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr12:13286270 Amtr06g01726 Amtr-Chr6:34669067 wgd