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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00400 ATGTCATCTCTCACAAATGTTCTTCTTATTCACCTTCTAATAACCTCAGTTATAATATTCCGTCCAGCCGCAGCAGGCGCCGCCGGCTTAAACTGGCTGACCAATCAACCCGGCGGCGCGTGCAGCGGCTCGATCGCGGAGTGTATGGGCACAGGAGAGTTTGAGATGGAGTCAGAGAGCACCAGGCGCATTTTAGCGACGACAAAGTACATCAGCTATGGTGCGCTGCGAGGGAACAATGTACCTTGCTCGCAAAGAGGTGCGTCGTATTATAACTGTCGATCTGGTGGTCAGGCTAATCCGTATCAGCGTGGTTGCAGTGCTATTACTCGTTGCCGGCGTTGA 345 52.46 MSSLTNVLLIHLLITSVIIFRPAAAGAAGLNWLTNQPGGACSGSIAECMGTGEFEMESESTRRILATTKYISYGALRGNNVPCSQRGASYYNCRSGGQANPYQRGCSAITRCRR 114
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00400 114 PANTHER RAPID ALKALINIZATION FACTOR-LIKE 7 114 - GO:0009506(PANTHER)|GO:0019722(PANTHER)
Amtr12g00400 114 Pfam Rapid ALkalinization Factor (RALF) 53 114 IPR008801 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00400 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr6:129265032 Amtr12g00400 Amtr-Chr12:13323168 dispersed
Amtr Amtr-Chr7:25511112 Amtr12g00400 Amtr-Chr12:13323168 dispersed
Amtr Amtr-Chr11:15248563 Amtr12g00400 Amtr-Chr12:13323168 dispersed
Amtr Amtr-Chr12:13323168 Amtr04g00778 Amtr-Chr4:11699934 wgd