Gene detail

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Gene ID

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amtr12g00495	ATGTCGTTTAAGAGTATACTTCAGGATATGAAGGGAGATTTGGGGAGCATTTCAAGAAGAGGATTTGGTTTGAGGTCTAGGTCACAGAGAGTGGTGGAGGATAGATCTTCGGTTGTTGTTGATGCATTGAAGCAGAGTTGTTGGGCGAACATGCCACCGGAGTTGTTACGGGATGTGTTGATGAGGATTGAGGCGTCTGAGGGTACCTGGCCTCCTCGGAAGAATGTGGTTTGTTGTGCCGGTGTTTGCAGGAATTGGAGGGAAATTATGAAAGATATTGTTAAGAATCCTGAGTTTTCTGGCAAATTGACGTTCCCTATTTCATTGAAGCAGCCTGGTCCAAGGAGCTCTCTAATACAGTGCTTTATAAAGCGGAATCGAAACACTCAAACATATCATCTCTACCTCAGTTTAAATCAAGCATCTAACGATGACGGGAAGTTTCTTCTTGCTGCTAAAAAATGTAGACGTGCTACATGCACAGATTATATAATTTCTTTGAATGCAGAAGATGTATCAAAAGGCAGCAGCACATACATAGGAAAGTTAAGATCAAACTTCCTTGGAACTAAATTCACTGTATATGATGCCCAACCTCCAAATGGTGGAGCTTTAACTGCAAAATGTCGTTCCATGAAGCCTGGGAGTATGAAACGAGTGTCACCTAGGGTTCCTGCTGGAAACTACCCGGTTTCCAACATTTCATATGAACTTAATGTCTTGGGGTCCAGGGGTCCAAGAAGGATGCAGTGTGTAATGAATGCAATTCCTGCAAGTGCTATGGACCCTGAGGGAGTGGCTCCAACGCAGACCGAGTTCCTTGTCAGCAATGTGGATTCATTTTCATCTCTACCTTTTTTCAGATCAAAATCTGCACGTATCGATAATTTCCAGTCTGGAACATTATTGACCGGTCAAAATGACCCAATGCTGGTGTTGAAGAACAAGGCGCCTAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAATTTTAATGGGCGGGTGACTGTTGCTTCTGTGAAAAACTTTCAGTTAGTTGCTTCCATGGAGAACGGAGACCATGAAAATGTGATTATACAGTTTGGAAAAGTTGGGAAAGACGTGTTCACCATGGACTATCAGTACCCGTTATCAGCTTTTCAGGCATTTGCTATTTGTCTCAGCAGTTTCGACACCAAAATTGCCTGTGAATGA	1194	43.38	MSFKSILQDMKGDLGSISRRGFGLRSRSQRVVEDRSSVVVDALKQSCWANMPPELLRDVLMRIEASEGTWPPRKNVVCCAGVCRNWREIMKDIVKNPEFSGKLTFPISLKQPGPRSSLIQCFIKRNRNTQTYHLYLSLNQASNDDGKFLLAAKKCRRATCTDYIISLNAEDVSKGSSTYIGKLRSNFLGTKFTVYDAQPPNGGALTAKCRSMKPGSMKRVSPRVPAGNYPVSNISYELNVLGSRGPRRMQCVMNAIPASAMDPEGVAPTQTEFLVSNVDSFSSLPFFRSKSARIDNFQSGTLLTGQNDPMLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASMENGDHENVIIQFGKVGKDVFTMDYQYPLSAFQAFAICLSSFDTKIACE	397

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amtr12g00495	397	ProSitePatterns	Tub family signature 2.	382	397	IPR018066	-
	Amtr12g00495	397	PANTHER	TUBBY-RELATED	44	396	-	-
	Amtr12g00495	397	CDD	F-box-AtTLP-like	48	92	-	-
	Amtr12g00495	397	Gene3D	Tubby Protein; Chain A	106	397	IPR025659	-
	Amtr12g00495	397	PRINTS	Tubby superfamily signature	228	255	IPR000007	-
	Amtr12g00495	397	PRINTS	Tubby superfamily signature	163	179	IPR000007	-
	Amtr12g00495	397	PRINTS	Tubby superfamily signature	179	203	IPR000007	-
	Amtr12g00495	397	PRINTS	Tubby superfamily signature	313	330	IPR000007	-
	Amtr12g00495	397	PRINTS	Tubby superfamily signature	375	397	IPR000007	-
	Amtr12g00495	397	PRINTS	Tubby superfamily signature	354	373	IPR000007	-
	Amtr12g00495	397	PRINTS	Tubby superfamily signature	331	347	IPR000007	-
	Amtr12g00495	397	SUPERFAMILY	Tubby C-terminal domain-like	97	397	IPR025659	-
	Amtr12g00495	397	Pfam	F-box domain	48	92	IPR001810	GO:0005515(InterPro)
	Amtr12g00495	397	SUPERFAMILY	F-box domain	42	92	IPR036047	GO:0005515(InterPro)
	Amtr12g00495	397	Pfam	Tub family	109	392	IPR000007	-
	Amtr12g00495	397	FunFam	Tubby-like F-box protein	105	397	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amtr12g00495	K19600	tubby and related proteins

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Amtr	Amtr-Chr2:81643069	Amtr12g00495	Amtr-Chr12:15701528	dispersed
	Amtr	Amtr-Chr3:39582305	Amtr12g00495	Amtr-Chr12:15701528	dispersed
	Amtr	Amtr-Chr4:91469897	Amtr12g00495	Amtr-Chr12:15701528	dispersed
	Amtr	Amtr-Chr11:59518927	Amtr12g00495	Amtr-Chr12:15701528	dispersed
	Amtr	Amtr-Chr12:15701528	Amtr07g03339	Amtr-Chr7:52177199	transposed
	Amtr	Amtr-Chr12:15701528	Amtr11g03034	Amtr-Chr11:63244076	transposed

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amtr01g00523	.	1	393	TUB Transcription Factor family	AT2G18280	59.529	2.36e-179	503.0
	Amtr02g02572	ACH	43	379	TUB Transcription Factor family	AT1G53320	70.92	1.07e-178	500.0
	Amtr02g04101	ACH	1	379	TUB Transcription Factor family	AT1G53320	67.363	0.0	517.0
	Amtr02g04888	.	165	224	TUB Transcription Factor family	AT2G47900	40.984	2.01e-06	41.6
	Amtr02g05362	.	1	393	TUB Transcription Factor family	AT2G18280	59.233	1.53e-173	488.0
	Amtr02g06157	ACH,WGDA	1	445	TUB Transcription Factor family	AT1G25280	74.834	0.0	625.0
	Amtr03g01730	.	94	406	TUB Transcription Factor family	AT2G47900	69.01	5.36e-156	440.0
	Amtr03g05811	.	32	397	TUB Transcription Factor family	AT1G16070	56.216	3.69e-151	431.0
	Amtr03g05812	.	31	290	TUB Transcription Factor family	AT1G16070	51.515	3.78e-90	272.0
	Amtr04g03915	.	30	406	TUB Transcription Factor family	AT2G47900	68.608	0.0	532.0
	Amtr05g04423	.	29	413	TUB Transcription Factor family	AT1G47270	56.391	6.16e-153	436.0
	Amtr05g05055	WGDA	1	445	TUB Transcription Factor family	AT1G25280	62.061	0.0	527.0
	Amtr06g04604	WGDA	1	445	TUB Transcription Factor family	AT1G25280	75.166	0.0	626.0
	Amtr07g03339	ACH,WGDA	1	445	TUB Transcription Factor family	AT1G25280	72.444	0.0	604.0
	Amtr08g01442	WGDA	1	445	TUB Transcription Factor family	AT1G25280	66.094	0.0	557.0
	Amtr11g02808	WGDA	1	445	TUB Transcription Factor family	AT1G25280	73.451	0.0	617.0
	Amtr11g03034	.	1	445	TUB Transcription Factor family	AT1G25280	71.957	0.0	608.0
	Amtr12g00495	.	1	406	TUB Transcription Factor family	AT2G47900	75.676	0.0	609.0

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Amtr	Tub	4e-111	CL0395		TF	TUB