AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amtr12g00500 | ATGAACCTTATAGAAGCAAATTATGGTCTAATGAAATCAGAATCAGAGACAGATTTTGTTCACCACATAGCTCTATTTGCAGCACTTCTTTGCGCATGCATTGTAATCGGTCATCTTCTTGAAGAAAGTCGATGGATGAATGAATCTATCACCGCTCTTGCAATTGGTTTAGGCACAGGAATTATTATTTTGCTAACGTCTGGTGGTACAAGCTCGCACATATTGGAATTCAAGCAGGAGTTTTTCTTTATATATCTTCTTCCACCAATTATATTCAATGCCGGGTTCCAGGTTAAAAAGAAACAGTTTTTTCAAAACTTCACAACTATTACCTTGTTTGGAGCCGTTGGTACATTGATATCCTTTGCCGTTATATCATTCGGCGCAACACGTTTGTTTCCTAAGCTGGGCATTGGTTATCTTGACATGAAGGATTATCTTTCACTTGGAGCCATCTTTTCTGCAACAGATTCTGTTTGCACCTTGCAGGTTCTTAATCAAGACGAAACACCATTGTTATACAGTCTAGTGTTTGGGGAGGGCGTAGTTAATGACGCCACATCTGTTGTACTTTTCAATGCAATTACAAAATTTGATCTATCAGACATGAACACTTTCACGGCCCTCAAATTTGCTGGGAATTTCTTGTCATTATTCGTCTTAAGTACTTTTTTGGGAGTTTTGGTTGGGCTGCTTTGTTCGTTCATCATTAGAACACTCTATTTCAGAAGGAATTCAACGGATCGTGAAGTCTCTCTTATGATACTGATGGCTTACCTTTCATATGTTTTAGCTGAAGTTTTTGGATTAAGTGGAATCCTTACTGTATTCTTTTGCGGTATTGTAATGTCACACTATGCTTGGCATAATGTCACCATCAATTCACAAGTAACTACAAAACATGCTTTTGCAACAATGTCATTTATTGCTGAAATCTTCATCTTCATGTATGTTGGTATGGATGCACTTGATGTTGAAAAATGGAAATTTGTCAATGACAGTCCGAGAAAATCTTTCGGGGCAAGTGGTGTACTACTTGGACTAATTATGGTTGGGAGAGCATGTTTTGTTTTCCCTATTTCAGTAATATCCAACTTAACCACAGAGAATACCGATAAGAAAATCGAGTTTAAGCAGCAGATCACGGTTTGGTGGGCTGGTCTAATGCGAGGCGCTGTCTCTGTGGCACTTGCTTATAAAAAGTTTACTGTGTCTGATGAACAACATATGGAGCCAGCCAATGCACTTTTGATTACCAGCACCATTATTATAGTTCTATTCAGTACTGTGGTGTTTGGACTGTTGACTAAGCCTATTATAAACTTGTTGACCAACTCATCTAATGTTGACCAAACACAACCATCAAGTCCAAAGTCAATCATGATGCCACTTATAGGGCATAGACTTGATCTAGAAGCTGAAACAGTAGATGATGAAACTAGTTTAGAGACAACAACCAACTTAAAAGTGATGTTTAGTAATCCTACTAACACCATTCATTATTATTGGAGGAAGTTTGATGATGCTTTTATGCGGCCGGTTTTTGGTGGAAGAGGGTTCATTTCTTATGTTACCGGTACCCGCGATGTGGCGTTGACATGA | 1602 | 38.51 | MNLIEANYGLMKSESETDFVHHIALFAALLCACIVIGHLLEESRWMNESITALAIGLGTGIIILLTSGGTSSHILEFKQEFFFIYLLPPIIFNAGFQVKKKQFFQNFTTITLFGAVGTLISFAVISFGATRLFPKLGIGYLDMKDYLSLGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAITKFDLSDMNTFTALKFAGNFLSLFVLSTFLGVLVGLLCSFIIRTLYFRRNSTDREVSLMILMAYLSYVLAEVFGLSGILTVFFCGIVMSHYAWHNVTINSQVTTKHAFATMSFIAEIFIFMYVGMDALDVEKWKFVNDSPRKSFGASGVLLGLIMVGRACFVFPISVISNLTTENTDKKIEFKQQITVWWAGLMRGAVSVALAYKKFTVSDEQHMEPANALLITSTIIIVLFSTVVFGLLTKPIINLLTNSSNVDQTQPSSPKSIMMPLIGHRLDLEAETVDDETSLETTTNLKVMFSNPTNTIHYYWRKFDDAFMRPVFGGRGFISYVTGTRDVALT | 533 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amtr12g00500 | 533 | Pfam | Sodium-hydrogen exchanger family | 30 | 440 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Amtr12g00500 | 533 | PRINTS | Na+-H+ exchanger signature | 110 | 118 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Amtr12g00500 | 533 | PRINTS | Na+-H+ exchanger signature | 95 | 109 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Amtr12g00500 | 533 | PRINTS | Na+-H+ exchanger signature | 150 | 160 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Amtr12g00500 | 533 | PRINTS | Na+-H+ exchanger signature | 81 | 92 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Amtr12g00500 | 533 | NCBIfam | sodium-hydrogen exchanger 3 | 23 | 453 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Amtr12g00500 | 533 | Gene3D | - | 142 | 194 | - | - | |
| Amtr12g00500 | 533 | PANTHER | SODIUM-HYDROGEN EXCHANGER | 14 | 521 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amtr12g00500 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 12918 | Amtr06g01761 | Amtr12g00500 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Amtr | Amtr-Chr7:25232867 | Amtr12g00500 | Amtr-Chr12:15798400 | dispersed | |
| Amtr | Amtr-Chr11:14685217 | Amtr12g00500 | Amtr-Chr12:15798400 | dispersed | |
| Amtr | Amtr-Chr12:15798400 | Amtr06g01761 | Amtr-Chr6:35131571 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Amtr01g02143 | . | 8 | 810 | Antiporters gene family | AT2G13620 | 69.317 | 0.0 | 1119.0 | |
| Amtr01g04609 | WGDA | 52 | 576 | Antiporters gene family | AT3G19490 | 81.015 | 0.0 | 821.0 | |
| Amtr01g06420 | ACH,WGDA | 1 | 687 | Antiporters gene family | AT3G62270 | 75.108 | 0.0 | 1076.0 | |
| Amtr01g06425 | ACH,WGDA | 1 | 404 | Antiporters gene family | AT5G33320 | 64.891 | 7.96e-176 | 494.0 | |
| Amtr01g06751 | ACH,WGDA | 52 | 388 | Antiporters gene family | AT1G61800 | 77.746 | 0.0 | 540.0 | |
| Amtr01g09293 | . | 7 | 545 | Antiporters gene family | AT1G08960 | 64.51 | 0.0 | 636.0 | |
| Amtr02g02212 | . | 43 | 563 | Antiporters gene family | AT5G64290 | 71.429 | 0.0 | 748.0 | |
| Amtr02g02223 | . | 33 | 972 | Antiporters gene family | AT2G01980 | 62.579 | 0.0 | 1150.0 | |
| Amtr02g02728 | ACH | 62 | 436 | Antiporters gene family | AT1G55730 | 74.468 | 0.0 | 573.0 | |
| Amtr02g05294 | ACH | 2 | 776 | Antiporters gene family | AT1G16380 | 39.313 | 0.0 | 553.0 | |
| Amtr02g06304 | . | 9 | 525 | Antiporters gene family | AT5G55470 | 69.826 | 0.0 | 741.0 | |
| Amtr02g06305 | . | 17 | 524 | Antiporters gene family | AT5G55470 | 63.78 | 0.0 | 653.0 | |
| Amtr02g08584 | . | 1 | 450 | Antiporters gene family | AT2G38170 | 60.746 | 0.0 | 520.0 | |
| Amtr02g09103 | . | 345 | 372 | Antiporters gene family | AT3G06450 | 67.857 | 7.97e-06 | 40.0 | |
| Amtr03g01034 | ACH | 51 | 592 | Antiporters gene family | AT2G19600 | 79.927 | 0.0 | 842.0 | |
| Amtr03g03609 | WGDA | 45 | 388 | Antiporters gene family | AT1G61800 | 78.571 | 0.0 | 555.0 | |
| Amtr03g03944 | WGDA | 1 | 404 | Antiporters gene family | AT5G33320 | 63.325 | 3.72e-173 | 488.0 | |
| Amtr03g03945 | ACH,WGDA | 1 | 687 | Antiporters gene family | AT3G62270 | 76.259 | 0.0 | 1093.0 | |
| Amtr03g04723 | . | 6 | 302 | Antiporters gene family | AT5G17400 | 74.747 | 2.74e-164 | 457.0 | |
| Amtr03g05675 | . | 1 | 296 | Antiporters gene family | AT1G79900 | 67.974 | 1.26e-144 | 407.0 | |
| Amtr03g05712 | ACH | 13 | 672 | Antiporters gene family | AT1G15460 | 70.772 | 0.0 | 984.0 | |
| Amtr03g05714 | ACH | 10 | 672 | Antiporters gene family | AT1G15460 | 71.343 | 0.0 | 989.0 | |
| Amtr03g06060 | ACH | 1 | 682 | Antiporters gene family | AT3G62270 | 74.459 | 0.0 | 1055.0 | |
| Amtr03g06846 | . | 570 | 595 | Antiporters gene family | AT4G23700 | 61.538 | 5.17e-06 | 38.1 | |
| Amtr04g01211 | . | 58 | 564 | Antiporters gene family | AT5G17860 | 41.877 | 2.02e-141 | 421.0 | |
| Amtr04g03301 | . | 145 | 790 | Antiporters gene family | AT1G06970 | 34.342 | 1.79e-137 | 421.0 | |
| Amtr04g03827 | . | 9 | 654 | Antiporters gene family | AT1G15460 | 65.438 | 0.0 | 893.0 | |
| Amtr04g04393 | . | 19 | 584 | Antiporters gene family | AT2G19600 | 77.431 | 0.0 | 843.0 | |
| Amtr04g05761 | . | 60 | 566 | Antiporters gene family | AT5G17860 | 45.283 | 2.32e-157 | 460.0 | |
| Amtr05g01389 | . | 1 | 410 | Antiporters gene family | AT5G46110 | 75.545 | 0.0 | 614.0 | |
| Amtr05g01390 | . | 1 | 408 | Antiporters gene family | AT5G46110 | 77.295 | 0.0 | 629.0 | |
| Amtr05g01715 | ACH | 55 | 380 | Antiporters gene family | AT5G13490 | 83.436 | 0.0 | 542.0 | |
| Amtr05g02668 | . | 1 | 112 | Antiporters gene family | AT3G62270 | 84.821 | 1.52e-61 | 197.0 | |
| Amtr05g02717 | . | 1 | 831 | Antiporters gene family | AT3G53720 | 65.468 | 0.0 | 1014.0 | |
| Amtr05g02821 | ACH | 1 | 383 | Antiporters gene family | AT5G13490 | 75.979 | 0.0 | 559.0 | |
| Amtr05g03027 | . | 56 | 381 | Antiporters gene family | AT3G01550 | 66.972 | 9.58e-156 | 442.0 | |
| Amtr05g03034 | . | 46 | 381 | Antiporters gene family | AT3G01550 | 66.766 | 1.50e-157 | 448.0 | |
| Amtr05g03817 | ACH | 10 | 404 | Antiporters gene family | AT5G33320 | 62.99 | 6.31e-159 | 452.0 | |
| Amtr05g05464 | . | 172 | 283 | Antiporters gene family | AT1G79900 | 35.652 | 9.19e-16 | 69.7 | |
| Amtr06g01761 | ACH | 27 | 534 | Antiporters gene family | AT3G05030 | 64.567 | 0.0 | 668.0 | |
| Amtr06g04275 | . | 1 | 786 | Antiporters gene family | AT5G41610 | 61.82 | 0.0 | 961.0 | |
| Amtr06g04453 | WGDA | 9 | 576 | Antiporters gene family | AT3G19490 | 77.583 | 0.0 | 831.0 | |
| Amtr06g05102 | . | 6 | 452 | Antiporters gene family | AT3G51860 | 69.737 | 0.0 | 585.0 | |
| Amtr06g05499 | . | 1 | 818 | Antiporters gene family | AT4G23700 | 62.393 | 0.0 | 1018.0 | |
| Amtr06g05501 | ACH | 6 | 795 | Antiporters gene family | AT4G23700 | 65.909 | 0.0 | 1031.0 | |
| Amtr06g06036 | WGDA | 13 | 543 | Antiporters gene family | AT3G05030 | 72.556 | 0.0 | 806.0 | |
| Amtr06g06081 | WGDA | 77 | 366 | Antiporters gene family | AT4G28390 | 40.476 | 2.02e-62 | 201.0 | |
| Amtr07g00045 | ACH | 30 | 283 | Antiporters gene family | AT1G79900 | 31.818 | 2.50e-39 | 139.0 | |
| Amtr07g00131 | . | 7 | 795 | Antiporters gene family | AT4G23700 | 63.291 | 0.0 | 991.0 | |
| Amtr07g00456 | WGDA | 10 | 304 | Antiporters gene family | AT5G17400 | 37.874 | 2.06e-63 | 201.0 | |
| Amtr07g00492 | WGDA | 6 | 540 | Antiporters gene family | AT3G05030 | 73.048 | 0.0 | 807.0 | |
| Amtr07g01206 | ACH | 25 | 441 | Antiporters gene family | AT1G55730 | 62.291 | 3.13e-180 | 508.0 | |
| Amtr07g01422 | ACH | 24 | 387 | Antiporters gene family | AT5G54800 | 75.135 | 0.0 | 550.0 | |
| Amtr07g01821 | WGDA | 14 | 542 | Antiporters gene family | AT3G05030 | 74.858 | 0.0 | 825.0 | |
| Amtr07g01896 | . | 39 | 407 | Antiporters gene family | AT5G17630 | 74.935 | 0.0 | 546.0 | |
| Amtr07g02097 | ACH,WGDA | 30 | 283 | Antiporters gene family | AT1G79900 | 32.423 | 2.36e-39 | 138.0 | |
| Amtr07g02882 | ACH | 12 | 795 | Antiporters gene family | AT4G23700 | 64.122 | 0.0 | 998.0 | |
| Amtr07g03170 | . | 31 | 563 | Antiporters gene family | AT5G64290 | 76.173 | 0.0 | 810.0 | |
| Amtr07g04056 | . | 369 | 440 | Antiporters gene family | AT2G38170 | 59.722 | 3.61e-26 | 98.2 | |
| Amtr07g05928 | ACH | 24 | 801 | Antiporters gene family | AT3G52080 | 43.902 | 0.0 | 692.0 | |
| Amtr08g00076 | . | 55 | 439 | Antiporters gene family | AT3G13320 | 74.805 | 0.0 | 599.0 | |
| Amtr08g00147 | . | 52 | 567 | Antiporters gene family | AT5G17860 | 43.818 | 3.70e-145 | 431.0 | |
| Amtr08g00255 | ACH | 13 | 619 | Antiporters gene family | AT1G15460 | 69.852 | 0.0 | 898.0 | |
| Amtr08g04553 | . | 92 | 410 | Antiporters gene family | AT5G64290 | 65.831 | 3.03e-154 | 443.0 | |
| Amtr08g04554 | . | 437 | 563 | Antiporters gene family | AT5G64290 | 65.354 | 4.27e-53 | 173.0 | |
| Amtr08g05127 | . | 165 | 260 | Antiporters gene family | AT1G61800 | 84.375 | 3.85e-54 | 171.0 | |
| Amtr08g05241 | . | 93 | 563 | Antiporters gene family | AT5G64290 | 64.756 | 0.0 | 637.0 | |
| Amtr08g05244 | . | 93 | 563 | Antiporters gene family | AT5G64290 | 69.002 | 0.0 | 679.0 | |
| Amtr08g05262 | . | 33 | 1142 | Antiporters gene family | AT2G01980 | 64.848 | 0.0 | 1374.0 | |
| Amtr08g05277 | . | 200 | 298 | Antiporters gene family | AT5G64290 | 63.636 | 4.46e-38 | 132.0 | |
| Amtr09g00018 | . | 7 | 656 | Antiporters gene family | AT5G25430 | 64.985 | 0.0 | 868.0 | |
| Amtr09g00327 | . | 288 | 376 | Antiporters gene family | AT5G25430 | 43.82 | 8.22e-16 | 68.2 | |
| Amtr09g00797 | . | 1 | 557 | Antiporters gene family | AT5G12860 | 81.172 | 0.0 | 878.0 | |
| Amtr09g04583 | . | 21 | 568 | Antiporters gene family | AT5G51710 | 76.277 | 0.0 | 849.0 | |
| Amtr10g01846 | . | 18 | 479 | Antiporters gene family | AT3G05030 | 32.983 | 2.78e-54 | 190.0 | |
| Amtr10g04202 | . | 37 | 845 | Antiporters gene family | AT5G37060 | 42.331 | 0.0 | 669.0 | |
| Amtr10g04252 | . | 83 | 407 | Antiporters gene family | AT5G46110 | 79.042 | 0.0 | 545.0 | |
| Amtr11g00516 | WGDA | 13 | 542 | Antiporters gene family | AT3G05030 | 75.283 | 0.0 | 820.0 | |
| Amtr11g00859 | ACH,WGDA | 30 | 277 | Antiporters gene family | AT1G79900 | 32.482 | 6.17e-37 | 131.0 | |
| Amtr12g00387 | . | 12 | 539 | Antiporters gene family | AT2G47600 | 66.481 | 0.0 | 733.0 | |
| Amtr12g00500 | ACH | 15 | 534 | Antiporters gene family | AT3G05030 | 63.602 | 0.0 | 676.0 |