Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amtr12g00542 | ATGGCTAAAAACCTCATCAAATACTCCGTCGTTGATGCGTTTACCGACAAAGCATTTAAAGGCAACCCAGCTGTTGCATGCTGGTTACAAGACATATCTAAAGACAATAAGTGGATGCAATCAGTTGCAACTGAATTTAACCTTCCAACTACCGCTTTTTTGACTACGGTTGTTGATCATGCTTCTGATCAACATCCTAGATTTAACCTCCGATGGTTCACTCGTGTATCCGAGGTTCCACTATGTGGTCATGCAACTTTAGCAGCTTCACACTTTGTGTTTGAGTCTGGATTGGTGAAGTCTAACACAGTTGAATTCTTAACTCTCTCTGGAGTTTTGACTGCTAAACGGATTCCGGTTAACGAGATCAATGGTTCGTCAGTTGGTGAACCGGAAGATAGTTTCTATATAGAGCTGGATTTTCCTCTTGGGACGGTTTCGGTTTTCAATGGTGTTGAGGTTTCTGTGATTTCGGAGATATTAAACGGTGTTTCGGTTGTTGATGTTCTGATGAAGAATTCTTTTGATGATCTTATTGTGGTGCTTCCATCAGCAGAAGATGTTGCAGATTTCAAGCCACAGTTTGATAAGATCATAGAGGCTCCGGGCAGGGCGATAATAATTACGTCACGTGCACCTAACGGGTCAGGGTTTGACTTCTATTCTCGTGTTTTCGGCCCTAAGATTGGAGTTGATGAGGATCCTGTTTGCGGCAGTGCACATTGCGCGTTAGCGCTCTATTGGCATGAGAAGTTAGGAAAATGTGATTTTGTTGCGTATCAGGCATCAAGTAGAAGTGGCGTATTGCATGTCCATCTCGATAAGCAGAATGAAAGAGTACGTATTCGAGGTAAAGCCACCACAATCATGGAAGGGTCTCTTTTGGTCTAA | 891 | 42.87 | MAKNLIKYSVVDAFTDKAFKGNPAVACWLQDISKDNKWMQSVATEFNLPTTAFLTTVVDHASDQHPRFNLRWFTRVSEVPLCGHATLAASHFVFESGLVKSNTVEFLTLSGVLTAKRIPVNEINGSSVGEPEDSFYIELDFPLGTVSVFNGVEVSVISEILNGVSVVDVLMKNSFDDLIVVLPSAEDVADFKPQFDKIIEAPGRAIIITSRAPNGSGFDFYSRVFGPKIGVDEDPVCGSAHCALALYWHEKLGKCDFVAYQASSRSGVLHVHLDKQNERVRIRGKATTIMEGSLLV | 296 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amtr12g00542 | 296 | PANTHER | PHENAZINE BIOSYNTHESIS PROTEIN | 6 | 296 | IPR003719 | GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER) | |
| Amtr12g00542 | 296 | Gene3D | Diaminopimelate Epimerase; Chain A, domain 1 | 10 | 292 | - | - | |
| Amtr12g00542 | 296 | NCBIfam | PhzF family phenazine biosynthesis isomerase | 9 | 294 | IPR003719 | GO:0003824(InterPro)|GO:0009058(InterPro) | |
| Amtr12g00542 | 296 | Gene3D | Diaminopimelate Epimerase; Chain A, domain 1 | 143 | 284 | - | - | |
| Amtr12g00542 | 296 | Pfam | Phenazine biosynthesis-like protein | 11 | 292 | IPR003719 | GO:0003824(InterPro)|GO:0009058(InterPro) | |
| Amtr12g00542 | 296 | PIRSF | Ismrse-PhzF | 4 | 296 | IPR003719 | GO:0003824(InterPro)|GO:0009058(InterPro) | |
| Amtr12g00542 | 296 | SUPERFAMILY | Diaminopimelate epimerase-like | 6 | 295 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amtr12g00542 | K06998 | trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Amtr | Amtr-Chr12:17047914 | Amtr12g00546 | Amtr-Chr12:17139255 | proximal |