AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00542 ATGGCTAAAAACCTCATCAAATACTCCGTCGTTGATGCGTTTACCGACAAAGCATTTAAAGGCAACCCAGCTGTTGCATGCTGGTTACAAGACATATCTAAAGACAATAAGTGGATGCAATCAGTTGCAACTGAATTTAACCTTCCAACTACCGCTTTTTTGACTACGGTTGTTGATCATGCTTCTGATCAACATCCTAGATTTAACCTCCGATGGTTCACTCGTGTATCCGAGGTTCCACTATGTGGTCATGCAACTTTAGCAGCTTCACACTTTGTGTTTGAGTCTGGATTGGTGAAGTCTAACACAGTTGAATTCTTAACTCTCTCTGGAGTTTTGACTGCTAAACGGATTCCGGTTAACGAGATCAATGGTTCGTCAGTTGGTGAACCGGAAGATAGTTTCTATATAGAGCTGGATTTTCCTCTTGGGACGGTTTCGGTTTTCAATGGTGTTGAGGTTTCTGTGATTTCGGAGATATTAAACGGTGTTTCGGTTGTTGATGTTCTGATGAAGAATTCTTTTGATGATCTTATTGTGGTGCTTCCATCAGCAGAAGATGTTGCAGATTTCAAGCCACAGTTTGATAAGATCATAGAGGCTCCGGGCAGGGCGATAATAATTACGTCACGTGCACCTAACGGGTCAGGGTTTGACTTCTATTCTCGTGTTTTCGGCCCTAAGATTGGAGTTGATGAGGATCCTGTTTGCGGCAGTGCACATTGCGCGTTAGCGCTCTATTGGCATGAGAAGTTAGGAAAATGTGATTTTGTTGCGTATCAGGCATCAAGTAGAAGTGGCGTATTGCATGTCCATCTCGATAAGCAGAATGAAAGAGTACGTATTCGAGGTAAAGCCACCACAATCATGGAAGGGTCTCTTTTGGTCTAA 891 42.87 MAKNLIKYSVVDAFTDKAFKGNPAVACWLQDISKDNKWMQSVATEFNLPTTAFLTTVVDHASDQHPRFNLRWFTRVSEVPLCGHATLAASHFVFESGLVKSNTVEFLTLSGVLTAKRIPVNEINGSSVGEPEDSFYIELDFPLGTVSVFNGVEVSVISEILNGVSVVDVLMKNSFDDLIVVLPSAEDVADFKPQFDKIIEAPGRAIIITSRAPNGSGFDFYSRVFGPKIGVDEDPVCGSAHCALALYWHEKLGKCDFVAYQASSRSGVLHVHLDKQNERVRIRGKATTIMEGSLLV 296
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00542 296 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 6 296 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Amtr12g00542 296 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 10 292 - -
Amtr12g00542 296 NCBIfam PhzF family phenazine biosynthesis isomerase 9 294 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Amtr12g00542 296 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 143 284 - -
Amtr12g00542 296 Pfam Phenazine biosynthesis-like protein 11 292 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Amtr12g00542 296 PIRSF Ismrse-PhzF 4 296 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Amtr12g00542 296 SUPERFAMILY Diaminopimelate epimerase-like 6 295 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00542 K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr12:17047914 Amtr12g00546 Amtr-Chr12:17139255 proximal