AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00549 ATGGCCACCCTTGATGTTTTTCATCTTACCAAAGGTGATACTACATCCCCAGGACTTGCATTTGAGAAAAAGATTGAATATCTTGAGAGCTTGACTGACAGAGTAAGCAACAGACGAGAGCGTAGATGGATAAATGATCGTATACTGTTGGAGCTTGTACCTCGTATGACTAGAGATGAAATTCGAGGCTTATTTGCTCCACCACCTTGGGGTGATGAGGCACGACCGTCACCATTTAGCATGACGAATGTTGAAGAGTGGGACAAATTTAGGAATATCGACATGGATAAAGAGGCTGGTGTTATAGCGGCCCTTACAGATTCCTCATCAAAGAAGAAAAGTCATGTGGATGCTGATAAGATAGCAGCATTGACTGCATGGCACAGAGTTGAATGCAAAACTAGAGACGCGTTTCGTAGAAGCTTTCTTCCAGAACTTGTTGATGGTTATGAGGAGAACATACGGGCCTTTGTTTCAGAGGCAGGTTGCGAGGAGGTTCTTGTACTACGCGTCCAATATCCTTTCCATAGGTTGTTACTTCATGGTGTTTGTGAGTTCTATGACTTGGTCTCAACAACGGAGTCCGAAACCAAAGGTACAAAGGTGTTGAAGATGACCAAAATCAAGAAGAAAAAAGCGGGCAGTAACGAGCTCCTGACTATCACTCTTTGCCAATTTCTAAAAATGGCAAAAGACGGGTTTTGGTAG 708 43.36 MATLDVFHLTKGDTTSPGLAFEKKIEYLESLTDRVSNRRERRWINDRILLELVPRMTRDEIRGLFAPPPWGDEARPSPFSMTNVEEWDKFRNIDMDKEAGVIAALTDSSSKKKSHVDADKIAALTAWHRVECKTRDAFRRSFLPELVDGYEENIRAFVSEAGCEEVLVLRVQYPFHRLLLHGVCEFYDLVSTTESETKGTKVLKMTKIKKKKAGSNELLTITLCQFLKMAKDGFW 235
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00549 235 Pfam R3H-associated N-terminal domain 22 140 IPR025952 -
Amtr12g00549 235 SUPERFAMILY R3H domain 128 206 IPR036867 GO:0003676(InterPro)
Amtr12g00549 235 PANTHER R3H DOMAIN-CONTAINING PROTEIN 4 18 233 IPR039629 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00549 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
360827 Amtr07g06232 Amtr12g00549
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr12:17184628 Amtr07g06232 Amtr-Chr7:132265884 wgd