AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00550 ATGAAGGTCTTCTCATGGTCCTCTGCTGTTCGCGCCTCTCTCTTTCTTCTTCTTCTCTTTACCTTTGCTTTTGCCTGTTTCTCTCTCCCTATAGACAAGATTTTGAAGAACTTTTTGTTGTGGATTAAGGAAGAGTTGGGACCTTGGGGTCCACTTGTTCTTGCTCTTGCGTACATTCCTCTTACGGTGTTTGCGGTTCCGGCTTCAGTGCTTACGCTTGGAGGGGGATATCTCTTTGGACTGCCAGTAGGATTTGTTGCTGATTCAATTGGTGCGACCCTTGGTGCAACGGCTGCTTTCCTTGTTGGCAAAACGATAGGACGGTCTTATGTCATTTCTAAGTTAAAGAAATATCCTAAGTTTCAGGCTATAGCTATTGCAATACAGAGATCTGGCTTCAAGATTGTTTTGCTGCTTCGTTTTGTTCCATTGCTTCCATTTAACGTCTTGAATTACCTGTTGTCCGTTACTCCTGTTCGCTTATGGGAGTATATGTTGGCAACTTGGCTTGGGATGATGCCAATCACATTTGTGTTCGTGTATATTGGAACAACTCTCAAGGACCTTTCCGATGTTACACATGGATGGCATGGGATATCAAAAACTCGTTGGATGTTTATGGCTGCCGGGCTCACAATATCAGTGATGATGATAGTTTACATCATCAAAGTTGCTAAAGCTTCTCTGGAAAAAGCGCTGTCTGAAAATGGTGCGATAGATGGCATTGATTTAGATTCACCTGGGCTGCCTATAACCGATTCAGCACTCGGTCTCCATAGACCTTTGATAACTACTGTGGACTCAGCTGTACACGATCTTGTTTGA 825 43.64 MKVFSWSSAVRASLFLLLLFTFAFACFSLPIDKILKNFLLWIKEELGPWGPLVLALAYIPLTVFAVPASVLTLGGGYLFGLPVGFVADSIGATLGATAAFLVGKTIGRSYVISKLKKYPKFQAIAIAIQRSGFKIVLLLRFVPLLPFNVLNYLLSVTPVRLWEYMLATWLGMMPITFVFVYIGTTLKDLSDVTHGWHGISKTRWMFMAAGLTISVMMIVYIIKVAKASLEKALSENGAIDGIDLDSPGLPITDSALGLHRPLITTVDSAVHDLV 274
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00550 274 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Amtr12g00550 274 PANTHER UNCHARACTERIZED 6 236 IPR015414 GO:0016020(PANTHER)|GO:0016020(InterPro)
Amtr12g00550 274 Pfam VTT domain 66 184 IPR032816 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00550 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr5:117065273 Amtr12g00550 Amtr-Chr12:17193977 dispersed
Amtr Amtr-Chr12:17193977 Amtr02g04450 Amtr-Chr2:86107060 transposed