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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00555 ATGGGTGCTTCTTCATCTGTTCCTGAAAATTCCATCCATGAATTCACTGTCAAGGACTCCAAGGGAAAGGATGTGGATCTAAGTGTGTACAAAGGAAAAGTTGTTCTGATTGTTAATGTTGCTTCCAAATGTGGTTTTACGAACTTTAATTACCCGAAAATGGCTGAGCTTCATCAAAAGTACAGAGATAAAGGTTTCGAAATCCTGGCATTTCCATGCAATCAATTCTTGTACCAAGAACCTGAAGCAAGTGAAAAAGTGGAAGAATTTGCGTGTTCAAGGTTTAACGCTGAATATCCCATCTTCCAAAAGATTCGTGTCAACGGCCCCAAAGCAGCACCTCTGTACAAGTTTCTTAAAGCCAAGAAAGGAGGATTCTGCGGGTCTAGAATCAAATGGAACTTCACAAAGTTTCTTGTGGATAAAGACGGCAAAGTCATAGGCCGCTATGGACCATCTACTTCACCATTATCAATCCAGGGCGATATTCAAAAGGCGTTAAACGCTTAG 510 40.98 MGASSSVPENSIHEFTVKDSKGKDVDLSVYKGKVVLIVNVASKCGFTNFNYPKMAELHQKYRDKGFEILAFPCNQFLYQEPEASEKVEEFACSRFNAEYPIFQKIRVNGPKAAPLYKFLKAKKGGFCGSRIKWNFTKFLVDKDGKVIGRYGPSTSPLSIQGDIQKALNA 169
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00555 169 ProSiteProfiles Glutathione peroxidase profile. 2 169 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Amtr12g00555 169 ProSitePatterns Glutathione peroxidases signature 2. 69 76 IPR029760 -
Amtr12g00555 169 PANTHER GLUTATHIONE PEROXIDASE 7 168 IPR000889 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0005829(PANTHER)|GO:0006979(InterPro)
Amtr12g00555 169 FunFam Glutathione peroxidase 3 169 - -
Amtr12g00555 169 CDD GSH-Peroxidase 11 163 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Amtr12g00555 169 ProSiteProfiles Thioredoxin domain profile. 6 169 IPR013766 -
Amtr12g00555 169 ProSitePatterns Glutathione peroxidases active site. 32 47 IPR029759 -
Amtr12g00555 169 SUPERFAMILY Thioredoxin-like 11 167 IPR036249 -
Amtr12g00555 169 Pfam Glutathione peroxidase 12 120 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Amtr12g00555 169 Gene3D Glutaredoxin 3 169 - -
Amtr12g00555 169 PRINTS Glutathione peroxidase family signature 131 140 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Amtr12g00555 169 PRINTS Glutathione peroxidase family signature 30 47 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Amtr12g00555 169 PRINTS Glutathione peroxidase family signature 66 82 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Amtr12g00555 169 PIRSF Glutathion-perox 2 169 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00555 K00432 glutathione peroxidase [EC:1.11.1.9]
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Event-related genes

Select Gene_1 Gene_2 Event_name
12927 Amtr06g01795 Amtr12g00555
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr6:35630074 Amtr12g00555 Amtr-Chr12:17365926 dispersed
Amtr Amtr-Chr7:41446790 Amtr12g00555 Amtr-Chr12:17365926 dispersed
Amtr Amtr-Chr7:41452445 Amtr12g00555 Amtr-Chr12:17365926 dispersed
Amtr Amtr-Chr12:17365926 Amtr06g05551 Amtr-Chr6:124876908 transposed