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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00914 ATGGAGATTTCTTCCTTCTACTCGACCTCAACCCGATGCTCACGTCCTTCATCAGATATGGTGCTGCTCAAGAAAGTTGGTGCTTCTCAATGCTATCAAGTTCAAGGTTCTGTTTTGATGTTTTCTAATAAAAGCAGATATAAGCAGTCACTTAATAAAAGTGTATTCTTAAAGCATAACAAATCCCCTGTTCAGGTGTCATGCAGCCAAAAGAAAGACATTCCTATATTAGAGGCTCGGTCTATGGACGAAATATATGATACTTTGGCGGAACGTTTGGTGCCAACTGCAGCTTCAGGAACAAATACCAGTTTAACGCATATTGTGGGCTTAGCAGGCCCTCCAGGAGCTGGAAAGACCACCATTGCTTTAGAGGTTGCTAAGCGTGTAAACAAATTATGGCCTCAAAAAGCATCTGGATTCGATTCTCAAGTGCAACCCCCAGAAATTGCAGTAGTCCTTCCCATGGATGGTTTCCATCTCTATCGTCACCAGCTTGATTCAATGGAGGATCCGAAAGAAGCCTATGCAAGAAGGGGAGCTCCATGGACATTTAGTCCTGAATTGTTCTTGAAATGCTTAAAGACCCTGAGGGAGCAGGGGTCGGTTTATGCTCCATCATTTGACCACGCTGTAGGAGACCCAATTGAAGATGATATTTATATAAATGTTAAGCACAAAGTTGTTATAGTGGAAGGAAATTATTTACTTCTGGATGAAGGTAGTTGGAAAGAAATATCATCAATGCTAGACGAAAAATGGTTTGTTGATGTTGACATTGACATCGCAATGGAACGGCTTTTGGAGAGACATATATCAACTGGTGTGGGTAGCACCCCAGAAATCGCCAAACAGCGGATCGAGTACAATGACAGACCAAATGCAGAACTTGTTTTCAAGTCTAAGAAAAACGCAGATTTGATAATCAAATCCGTTTCTCTTTGA 945 41.59 MEISSFYSTSTRCSRPSSDMVLLKKVGASQCYQVQGSVLMFSNKSRYKQSLNKSVFLKHNKSPVQVSCSQKKDIPILEARSMDEIYDTLAERLVPTAASGTNTSLTHIVGLAGPPGAGKTTIALEVAKRVNKLWPQKASGFDSQVQPPEIAVVLPMDGFHLYRHQLDSMEDPKEAYARRGAPWTFSPELFLKCLKTLREQGSVYAPSFDHAVGDPIEDDIYINVKHKVVIVEGNYLLLDEGSWKEISSMLDEKWFVDVDIDIAMERLLERHISTGVGSTPEIAKQRIEYNDRPNAELVFKSKKNADLIIKSVSL 314
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00914 314 Pfam Phosphoribulokinase - Uridine kinase family 108 313 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Amtr12g00914 314 PANTHER URIDINE KINASE 106 310 - GO:0005737(PANTHER)
Amtr12g00914 314 Gene3D - 135 313 IPR027417 -
Amtr12g00914 314 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 310 IPR027417 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00914 - -
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Amtr01g01853 . 174 226 PRT gene family AT1G27450 75.472 6.00e-24 88.2
Amtr01g02046 . 27 447 PRT gene family AT3G27440 76.01 0.0 665.0
Amtr01g06847 ACH 1 469 PRT gene family AT4G26510 81.663 0.0 802.0
Amtr01g08182 . 5 351 PRT gene family AT5G40870 80.172 0.0 561.0
Amtr02g05920 ACH,WGDA 1 191 PRT gene family AT5G11160 78.534 7.01e-104 295.0
Amtr03g01745 . 31 244 PRT gene family AT3G27440 26.891 1.27e-18 85.5
Amtr03g02156 WGDA 11 181 PRT gene family AT4G22570 79.191 1.20e-97 278.0
Amtr03g05133 ACH 32 239 PRT gene family AT1G27450 73.077 2.46e-106 305.0
Amtr03g05748 ACH,WGDA 1 192 PRT gene family AT1G80050 78.238 1.05e-103 295.0
Amtr04g01293 ACH,WGDA 11 225 PRT gene family AT3G53900 73.023 6.01e-118 333.0
Amtr04g04261 . 68 181 PRT gene family AT4G22570 68.966 1.69e-43 141.0
Amtr04g04948 WGDA 4 183 PRT gene family AT4G22570 78.022 2.46e-101 288.0
Amtr05g02978 . 1 483 PRT gene family AT5G40870 82.402 0.0 820.0
Amtr06g00301 . 2 187 PRT gene family AT1G71750 67.742 8.55e-90 259.0
Amtr06g02330 ACH,WGDA 2 225 PRT gene family AT3G53900 75.0 6.44e-128 361.0
Amtr07g01531 ACH,WGDA 1 469 PRT gene family AT4G26510 82.128 0.0 810.0
Amtr07g01952 . 31 208 PRT gene family AT3G27440 27.041 1.17e-16 79.7
Amtr07g05918 . 105 273 PRT gene family AT2G16570 26.396 2.42e-07 52.0
Amtr08g00754 ACH 66 241 PRT gene family AT1G27450 79.545 4.86e-101 290.0
Amtr08g01173 . 63 242 PRT gene family AT5G40870 28.333 7.57e-18 85.1
Amtr08g05235 . 186 289 PRT gene family AT2G16570 38.679 7.28e-08 53.1
Amtr08g05560 . 145 190 PRT gene family AT5G11160 60.87 2.47e-11 54.3
Amtr09g01990 . 95 258 PRT gene family AT4G38880 26.596 1.11e-06 50.1
Amtr09g02440 ACH 186 289 PRT gene family AT2G16570 35.849 1.35e-07 52.4
Amtr09g03122 . 31 224 PRT gene family AT1G55810 28.866 3.62e-17 82.8
Amtr10g02221 . 77 560 PRT gene family AT4G34740 84.711 0.0 848.0
Amtr10g02813 . 67 561 PRT gene family AT4G34740 81.616 0.0 830.0
Amtr10g04321 . 39 191 PRT gene family AT1G55810 23.377 4.56e-09 58.2
Amtr11g00287 WGDA 1 469 PRT gene family AT4G26510 83.439 0.0 816.0
Amtr11g00754 . 31 208 PRT gene family AT3G27440 28.09 5.15e-16 77.8
Amtr12g00914 . 31 208 PRT gene family AT3G27440 25.248 2.00e-09 56.6