AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00927 ATGGCAGAGGGTAACATTGATGAACATGAAATTGCGGTGATGCCGGAGAACTATGTTCAAGTTGAAGCTCAAGTTCCTGAGAATGAAAACGAGGAAGAACATGGTGATGGTGCTGTAGAGACTCAAGATAATGAGGAAGAAGTAGAAGAGCAAGGCGGTGGTGCGGTGGAGGGTGGTGATGCAGGCAATGCTGCTGCGGAAGGTGTTGTGGAAAATAAATGGCCCGGGTGGCCTGGAGAGAACTGTTTCAGAATTTTGGTTCCTGCGCAGAAAGTCGGTGTAATCATTGGACGGAAGGGAGAGTACATAAAGAAAACATGTGAAGAAACGCGTGCTCGCATTAAGATTCTTGATGGTCCTCCTGGTACTACTGAAAGAGCTGTGTTGATTTCTGCAAAGGAAGAACCAGAAGTTCCTATTCCTCCTGCAATGGATGGTTTGCTAAAGGTTCATCAACGTGTCATTGATGATGACAAAGATTCTCCTTATGGCCCACCTGGTGGGCTGACGACTATTACCACCAGGCTACTGGCGGCAGGTGCACAAGGTGGAAGCTTGATAGGGAAGCAAGGTGCCACCATAAAGACCATTCAAGATTCTTCAAATTGTAAAATCCGTGTTATAGGAGAAAACCTACCAGTTTTTGCTCTACCTGAAGATAACGTTGTTGAGATACACGGGGACCCTACAGGTGTGCACAAGGCTTTGGAACTGATTGCAACTCATCTAAGAAAGTTTTTAGTTGACCGGAGTGTCATTGGTATATTTGAGACTCAAATGCAAATGCCAAGTTCCCGTCCAAATCACGAGATGGCCCCACCCCAACCTTGGGGAGCACCATCTCCTCAAGGTTTCCCAGGTGGTGGGCCCGGTTTTGGAGGTGGTTTCGGAAACAATCAGTTTTTGCCTCCTCAGCACCAGTTTGACAACTACTTTCCAAGAGTGGACATGCCTCCACCTTTGGATAAACAGCCTCGTCAGGGCCCGCCTTTTGGTAGAGATCCATCTACAGGACCACCTCACACTTCAAGTGTGCAGCCTCAACAGTCAACAATGGTCACAAAGGTCTCACAGAACATGCAGATCCCTCTTTCATATGCCGATGCTGTAATTGGTACATCGGGCACTAATATTAGTTATATCAGACGCGCCAGTGGTGCAACCATTGCAATACAAGAAACAAGGGGCGTTCCTGATGAAATGACTGTCGAGATTAATGGTACAGCTTCACAAGTTCAGACAGCTCAGCAGTTGATACAGAATTTTGTTGCTGAAGCTGCAACTGCAGCTCAGAATTCAGCTGCTCCGCCGCCTGCCCAAGGAAGCTATAACCCCTACCCTGGTCATGCCCCTGCTGCTTACCCATCTCAACCACCTCCTACCGCCGCCCATGCACCGCCACCTGCAGCTGACTATGGTGGATCCGTATATGGAGGGAATTACGGGTATTAA 1452 48.14 MAEGNIDEHEIAVMPENYVQVEAQVPENENEEEHGDGAVETQDNEEEVEEQGGGAVEGGDAGNAAAEGVVENKWPGWPGENCFRILVPAQKVGVIIGRKGEYIKKTCEETRARIKILDGPPGTTERAVLISAKEEPEVPIPPAMDGLLKVHQRVIDDDKDSPYGPPGGLTTITTRLLAAGAQGGSLIGKQGATIKTIQDSSNCKIRVIGENLPVFALPEDNVVEIHGDPTGVHKALELIATHLRKFLVDRSVIGIFETQMQMPSSRPNHEMAPPQPWGAPSPQGFPGGGPGFGGGFGNNQFLPPQHQFDNYFPRVDMPPPLDKQPRQGPPFGRDPSTGPPHTSSVQPQQSTMVTKVSQNMQIPLSYADAVIGTSGTNISYIRRASGATIAIQETRGVPDEMTVEINGTASQVQTAQQLIQNFVAEAATAAQNSAAPPPAQGSYNPYPGHAPAAYPSQPPPTAAHAPPPAADYGGSVYGGNYGY 483
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00927 483 Gene3D - 80 249 - -
Amtr12g00927 483 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 352 426 IPR036612 GO:0003723(InterPro)
Amtr12g00927 483 ProSiteProfiles Type-1 KH domain profile. 171 239 - -
Amtr12g00927 483 Gene3D K Homology domain, type 1 342 431 IPR036612 GO:0003723(InterPro)
Amtr12g00927 483 SMART kh-6 354 424 IPR004087 GO:0003676(InterPro)
Amtr12g00927 483 SMART kh-6 170 244 IPR004087 GO:0003676(InterPro)
Amtr12g00927 483 SMART kh-6 79 159 IPR004087 GO:0003676(InterPro)
Amtr12g00927 483 MobiDBLite consensus disorder prediction 451 466 - -
Amtr12g00927 483 CDD KH-I-PEPPER-rpt1-like 80 148 - -
Amtr12g00927 483 MobiDBLite consensus disorder prediction 263 355 - -
Amtr12g00927 483 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 73 134 IPR036612 GO:0003723(InterPro)
Amtr12g00927 483 ProSiteProfiles Type-1 KH domain profile. 355 419 - -
Amtr12g00927 483 CDD KH-I-PEPPER-like-rpt3 355 423 - -
Amtr12g00927 483 MobiDBLite consensus disorder prediction 431 471 - -
Amtr12g00927 483 CDD KH-I-PEPPER-rpt2-like 173 244 - -
Amtr12g00927 483 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 49 428 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Amtr12g00927 483 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 164 253 IPR036612 GO:0003723(InterPro)
Amtr12g00927 483 MobiDBLite consensus disorder prediction 269 283 - -
Amtr12g00927 483 Pfam KH domain 358 420 IPR004088 GO:0003723(InterPro)
Amtr12g00927 483 Pfam KH domain 182 239 IPR004088 GO:0003723(InterPro)
Amtr12g00927 483 Pfam KH domain 84 135 IPR004088 GO:0003723(InterPro)
Amtr12g00927 483 ProSiteProfiles Type-1 KH domain profile. 80 147 - -
Amtr12g00927 483 MobiDBLite consensus disorder prediction 318 336 - -
Amtr12g00927 483 MobiDBLite consensus disorder prediction 24 62 - -
Amtr12g00927 483 MobiDBLite consensus disorder prediction 38 53 - -
Amtr12g00927 483 MobiDBLite consensus disorder prediction 337 355 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00927 K21444 poly(rC)-binding protein 3/4
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Event-related genes

Select Gene_1 Gene_2 Event_name
13295 Amtr08g05403 Amtr12g00927
360815 Amtr07g04469 Amtr12g00927
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr8:132612830 Amtr12g00927 Amtr-Chr12:25121111 dispersed
Amtr Amtr-Chr11:54982759 Amtr12g00927 Amtr-Chr12:25121111 dispersed
Amtr Amtr-Chr12:25121111 Amtr07g04469 Amtr-Chr7:93160672 wgd