AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g01631 ATGGTGTTGTATACAGAATCTTTATTAGCATCCACATCCACATCATCTGTTACTTGTTTTGACGATGGAAGCTACACAGTTGGAAAGAAAAGTGTACCGAAATCTTCGAGTTCAGCTACACCAAACCCGCCTTTGTACATTGTTTACCCTACCAAAAAAGGGACTTATCCTATTATACTCTTTCTTCACGGTTTTTCAATCCCTAATACTTCTTATAGCGATCTCTTTGAGTTTATTGCCTCTCATGGTTACATTATCGTCGCTCCTGGTCAAACTTTGTTTGGGCTATTGAAGGGTCTATTTGTAGCTTCTGCTATTGGTGATGTGGACGATGCAGCCAAAACAGGCAACTGGATAAACATAAACCAAGGCGAAAACCTCCAACGTGAACTCCCACATGATGTATCACCAGATCTTGAGAATGTAGCACTAGCCGGCCATAGCAAAGGCGGGAAAGCAGCATTTGCATTAGCGTTAGGCCACGGCAATACGAGCCTTAAATTCAAGGCTCTTATTGGTCTAGATCCTGTTGCAGGACCAAATACATCCAACAGGCTCGAACCCAAGATCTTAAACTACATACCCCAAAATTTCAATATACCCATGCCTATAGCCTTAATAGGGACAGGCTTGGGTGATGATGGATTTTGCGGGTGTTTCCCACCCGCAGCACCTTGGGGATGTAACCATCCTTTTTTCTTTAACGAGTGCAAACCCCCTGTGTGTTATTTTGTAGCCAAGGACTTTGGTCACATGGACATGGTTGATGATTGGTTGGTTAGGTTGTCGGGCATGTTTATATGCAAGACTGGGAAGGGTCCGTATGCGGTTATGAGAAGAGCTTGCGGAGGCATCTTTGTTGCCTTTCTCAAGACTTATATGTTTGATGATGCTGAAGATCTCACAACCATAATTGGTTCACCTAGTTCTATTGCTCCGACTAAGCTTGATCCAGTTTTATGGCTTCAGTCATGA 975 43.28 MVLYTESLLASTSTSSVTCFDDGSYTVGKKSVPKSSSSATPNPPLYIVYPTKKGTYPIILFLHGFSIPNTSYSDLFEFIASHGYIIVAPGQTLFGLLKGLFVASAIGDVDDAAKTGNWININQGENLQRELPHDVSPDLENVALAGHSKGGKAAFALALGHGNTSLKFKALIGLDPVAGPNTSNRLEPKILNYIPQNFNIPMPIALIGTGLGDDGFCGCFPPAAPWGCNHPFFFNECKPPVCYFVAKDFGHMDMVDDWLVRLSGMFICKTGKGPYAVMRRACGGIFVAFLKTYMFDDAEDLTTIIGSPSSIAPTKLDPVLWLQS 324
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g01631 324 SUPERFAMILY alpha-beta-Hydrolases 44 258 IPR029058 -
Amtr12g01631 324 Gene3D alpha-beta hydrolase 10 310 IPR029058 -
Amtr12g01631 324 Pfam Chlorophyllase 13 317 IPR017395 -
Amtr12g01631 324 PANTHER CHLOROPHYLLASE-2, CHLOROPLASTIC 9 320 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g01631 K08099 chlorophyllase [EC:3.1.1.14]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr12:38650866 Amtr12g01632 Amtr-Chr12:38655111 tandem