AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g01633 ATGGACAGTTTATGGCAGTTGCCGGAGAGTCCAAGGAAGCCAATGGAGTTCTTGTCAAGGTCATGGAGTGATGCTAATCTTAAAACACTGCATTCACCTCCTTCTCCGTTGACTTCTAAGCCTGTGTTGACCACAACTAGACCCAGCACACATAATAATAATAATATTATTATGCCGGAGAGTAATGGTGTTGATGGGTCGGAGGAGTCTGTTACGGCGGAGATGCTTACCGGAAACACGTTTTCTTTTGCTTCTTCTGCTACTTCTCAGCTTGTTCTTGAACGGATCATGTCTCAGTCTGATCTATCACCCTTAGCTTCAGGGAGACTCTCACATAGCAGTGGACCACTGAACCCATTGCACATGGAAGATACCGACAGTCCTCACATCTCACCCTCCGACGAGTACGAAGACGTCGTTAAGTTTTTGCGCGCAAACAACAGCCTGCAACCGTTATTTGCCAATGGTAGGAGTGGATATGTGGCAGGCGGATGTAGCACAACGCCTGCTGGAAAGACGGTAGGACGATGGTTGAAGGAGAGGAGAGAGAAGAAGAAGGAAGAGACGCGGGCCCACAATGCGCAGCTCCATGCTGCAGTCTCGGTTGCTGGAGTGGCAGCAGCTGTGGCCACCATTGCAGCAGCCACTGCAGCCGCTTCTGTGTCTAGTAAAGATGAACAAATGGCCAAAACTAATATGGCTGTGGCCTCGGCTGCAACTTTGGTGGCTGCGCAGTGCGTGGAGGCAGCTGAGGCGATGGGAGCTGAACGAGAACACCTTGTAGCCGCTGTTAGCTCTGCGGTTAATGTCAAATCCCATGGAGATATATTAACTCTCACTGCTGCGGCTGCAACAGCTCTACGTGGCGCAGCAACGTTGAAGGCAAGGGCACTAAAGGAAGTATGGAACATAGCGGCGGTAATACCAGTGGAACGAGGACTTAAAGAAAGTAAAAGCCAAGGAAATAACAATGGCCAATGTGAACAGATTCCCTCTGAAGAGAATTTTTTGGGTATATGTAACCAAGAACTGCTAGCCCGTGGGAGTGAGCTTCTTAAGCGCACCCGTAATGGCGATCTTCACTGGAAAATTGTGTCGGTTTACATCCATCGAACGGGTCAAGTGATGCTAAAGATGAAGAGCAAACATGTTGGATCTACCATCACAAAAAAGAAGAAAAATGTGGTGTTGGAGGTTTGCAAGAACATTTCGGCATGGCCAGGGAGACATCTATTTGACGGAGGGGAGGAACGACATTATTTCGGGTTGAGGACCGTTGGACGTGGATTGGTTGAGTTCGAGTGTAGGACTAAAAGAGAATATGATATGTGGACTCAAGGTGTTTCTAGGCTTCTTTCCATTGTAGAAGAAAGGAAGTCCACTAAGTAA 1389 48.16 MDSLWQLPESPRKPMEFLSRSWSDANLKTLHSPPSPLTSKPVLTTTRPSTHNNNNIIMPESNGVDGSEESVTAEMLTGNTFSFASSATSQLVLERIMSQSDLSPLASGRLSHSSGPLNPLHMEDTDSPHISPSDEYEDVVKFLRANNSLQPLFANGRSGYVAGGCSTTPAGKTVGRWLKERREKKKEETRAHNAQLHAAVSVAGVAAAVATIAAATAAASVSSKDEQMAKTNMAVASAATLVAAQCVEAAEAMGAEREHLVAAVSSAVNVKSHGDILTLTAAAATALRGAATLKARALKEVWNIAAVIPVERGLKESKSQGNNNGQCEQIPSEENFLGICNQELLARGSELLKRTRNGDLHWKIVSVYIHRTGQVMLKMKSKHVGSTITKKKKNVVLEVCKNISAWPGRHLFDGGEERHYFGLRTVGRGLVEFECRTKREYDMWTQGVSRLLSIVEERKSTK 462
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g01633 462 PANTHER EXPRESSED PROTEIN 7 457 IPR040269 GO:0009734(PANTHER)|GO:0010087(PANTHER)|GO:0010305(PANTHER)
Amtr12g01633 462 Pfam Plant pleckstrin homology-like region 350 455 IPR013666 -
Amtr12g01633 462 Pfam Auxin canalisation 8 312 IPR008546 -
Amtr12g01633 462 MobiDBLite consensus disorder prediction 30 66 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g01633 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr3:38253101 Amtr12g01633 Amtr-Chr12:38675541 dispersed
Amtr Amtr-Chr11:71623497 Amtr12g01633 Amtr-Chr12:38675541 dispersed
Amtr Amtr-Chr12:38675541 Amtr04g00871 Amtr-Chr4:13393402 wgd