AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g01636 ATGGAGAATTATGAAATACTAGAACAGATTGGTAAAGGGTCCTTTGCTTCGGCTTTACTCGTGAGACATAAACATGAAAAGAAAAGGTATGTCTTGAAGAAGATTCGACTTGCTCGCCAGTCTGATAGGACCCGCCGATCTGCTCTCTTGGAGATGGAACTAATTTCCACTGTACAGAATCCTTTTATAGTGGAGTATAAAGATTCATGGGTTGAAAAGGGTTGCTATGTATGCATTGTTATAGCGTACTGTGAAGGAGGCGATATGGCGGACGCAATAAAAAAAGCCAACGCTGCTCATTTTCCAGAAGAGAAACTTTGCAAATGGCTCGTTCAGCTATTGGTGGCGCTTGATTATTTGCACGCCAATCATATTATTCACCGTGATGTCAAGTGTTCAAATATATTCCTAACAAGAGATCAAGATATCCGACTTGGTGATTTCGGTCTTGCAAAAATGTTGACTTCTGATGATCTTGCATCCTCGATTGTTGGAACTCCGAGTTATATGTGCCCTGAACTTCTTGCAGATATACCTTACGGCTCAAAATCAGACATATGGTCGTTAGGGTGCTGCATGTATGAAATGGCCGCCTTCAAGTCTGCATTTAAAGCTTTTGACATGCAGTCTCTAATCAACAAAATTAATAAATCCATAGTCTCTCCACTTCCAACCATGTATTCTGGCACATTCCGAGGGCTTATTAAGAGCATGCTGCGAAAAAACCCCGAAATGAGACCAAGCGCTGCTGATTTGCTCAAACATTCACATCTTCAACCATATGTACTTAAACTCTATGTTAACATCAACGGGCCTAGGCGCCATACACTTCCAGCCCAGTGGTCAGATTACAACTACGAAAAGAAAACCACGTTCATTGAGCCCGAACCGCGAACTGTTGTTAATCTCCACAATGGAAAAAGACCATCTTTTAGCAGTGACAGGGGTTTAAATCCTAGTATATCCGAACATGATCAATATTCTTTGTGTTCTCAAACTTCAACAAGAAAGCTATCCATTGGCAGTGTTGAAGAGTATATACAAACTGAGAAATTAGTAGCTGCCAGGTCAGCTATTGCTGTAAAACCTTCTGTTATCACTCCCAGAAGACAAATTGCTTCGCCGAATGTCATACGAAGGAGTTCAGATCGTGATGTGCTTCCTATACCACAAACTCCAAGCAGCATATCTTCGCGAGCAGCTCGTCGGACATCCTTACCCTTATCAACAAGGGCTACAAAACCACATTTGGGTTTCGAATCTCCAGATGTATCAGTGAACGCTCCGCGGATAGACAAAATGACGGATTTATCCTTAATGTACACACAATCACCCGTGATCCCACCAGCCTGTAAAACATCTTCAACGTCTGCTCAATGTTCTTCTGCCACTTCTTCAAACACCATCCCAGACCGGTCAGTTACAATCGACATGTGTACAGTCAAGACTGTGATCCCCAAGCAAACAAGCGCCAGTGGAGCTCATTCTCATTCTCATTCTACAAACAACAGGAGCGATGAAACATCATCGGATTCAAGGGGACCGAGGTTTGACACTTCATCGTACCAACAACGAGCTGAAGCACTAGAAGGCTTGTTGGAGTTCAGTGCACAACTTATGCAACAACAACGGATAGAAGAGTTAGCAGTTCTGTTGAAACCGTTTGGGCCCGAAAAAGTGTCTCCTAGAGAAACTGCAATTTGGTTGTCAAAGAGCTTGAAGCGAACCGGAACCGGAACCGGGCCTAGCGTTTTGCGAAATTCGTAG 1767 43.24 MENYEILEQIGKGSFASALLVRHKHEKKRYVLKKIRLARQSDRTRRSALLEMELISTVQNPFIVEYKDSWVEKGCYVCIVIAYCEGGDMADAIKKANAAHFPEEKLCKWLVQLLVALDYLHANHIIHRDVKCSNIFLTRDQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCMYEMAAFKSAFKAFDMQSLINKINKSIVSPLPTMYSGTFRGLIKSMLRKNPEMRPSAADLLKHSHLQPYVLKLYVNINGPRRHTLPAQWSDYNYEKKTTFIEPEPRTVVNLHNGKRPSFSSDRGLNPSISEHDQYSLCSQTSTRKLSIGSVEEYIQTEKLVAARSAIAVKPSVITPRRQIASPNVIRRSSDRDVLPIPQTPSSISSRAARRTSLPLSTRATKPHLGFESPDVSVNAPRIDKMTDLSLMYTQSPVIPPACKTSSTSAQCSSATSSNTIPDRSVTIDMCTVKTVIPKQTSASGAHSHSHSTNNRSDETSSDSRGPRFDTSSYQQRAEALEGLLEFSAQLMQQQRIEELAVLLKPFGPEKVSPRETAIWLSKSLKRTGTGTGPSVLRNS 588
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g01636 588 FunFam Serine-threonine-protein kinase Nek2 84 274 - -
Amtr12g01636 588 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Amtr12g01636 588 MobiDBLite consensus disorder prediction 385 406 - -
Amtr12g01636 588 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Amtr12g01636 588 CDD STKc-Nek 3 258 - -
Amtr12g01636 588 Gene3D Transferase(Phosphotransferase) domain 1 79 267 - -
Amtr12g01636 588 PANTHER SERINE-THREONINE-PROTEIN KINASE NEK 4 544 IPR050660 GO:0004674(PANTHER)
Amtr12g01636 588 FunFam Probable serine-threonine-protein kinase nek1 1 83 - -
Amtr12g01636 588 ProSitePatterns Serine-Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Amtr12g01636 588 SMART serkin-6 4 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Amtr12g01636 588 MobiDBLite consensus disorder prediction 450 469 - -
Amtr12g01636 588 MobiDBLite consensus disorder prediction 487 520 - -
Amtr12g01636 588 MobiDBLite consensus disorder prediction 387 406 - -
Amtr12g01636 588 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Amtr12g01636 588 Gene3D Phosphorylase Kinase; domain 1 1 78 - -
Amtr12g01636 588 SUPERFAMILY Protein kinase-like (PK-like) 1 259 IPR011009 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g01636 K08857 serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr1:216420966 Amtr12g01636 Amtr-Chr12:38736578 dispersed
Amtr Amtr-Chr2:77688653 Amtr12g01636 Amtr-Chr12:38736578 dispersed
Amtr Amtr-Chr12:37376529 Amtr12g01636 Amtr-Chr12:38736578 dispersed
Amtr Amtr-Chr12:38736578 Amtr02g03136 Amtr-Chr2:68006668 dispersed
Amtr Amtr-Chr10:96387596 Amtr12g01636 Amtr-Chr12:38736578 wgd
Amtr Amtr-Chr10:62763022 Amtr12g01636 Amtr-Chr12:38736578 wgd
Amtr Amtr-Chr12:38736578 Amtr04g00869 Amtr-Chr4:13341660 wgd
Amtr Amtr-Chr12:38736578 Amtr04g03632 Amtr-Chr4:83172765 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Amtr01g08210 . 1 516 MAP Kinase Kinase gene family AT5G40440 78.876 0.0 866.0
Amtr02g03119 ACH,WGDA 1 333 MAP Kinase Kinase gene family AT3G21220 73.134 1.82e-170 477.0
Amtr02g03256 . 1 354 MAP Kinase Kinase gene family AT4G29810 69.209 0.0 532.0
Amtr02g03296 ACH 8 354 MAP Kinase Kinase gene family AT5G56580 82.709 0.0 606.0
Amtr06g02633 . 1 308 MAP Kinase Kinase gene family AT1G73500 61.875 1.36e-134 382.0
Amtr08g00075 ACH 1 346 MAP Kinase Kinase gene family AT3G21220 65.13 3.57e-155 437.0
Amtr08g02108 . 172 204 MAP Kinase Kinase gene family AT1G51660 51.515 8.34e-06 40.0
Amtr11g02062 ACH 8 356 MAP Kinase Kinase gene family AT5G56580 82.235 0.0 609.0
Amtr11g03780 ACH,WGDA 1 334 MAP Kinase Kinase gene family AT1G51660 71.261 3.27e-171 480.0
Amtr11g03949 . 1 354 MAP Kinase Kinase gene family AT4G29810 66.949 0.0 524.0
Amtr12g01572 . 61 333 MAP Kinase Kinase gene family AT4G29810 30.435 6.72e-40 147.0
Amtr12g01636 . 67 333 MAP Kinase Kinase gene family AT4G29810 32.103 6.60e-37 139.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Amtr Pkinase 1.4e-62 CL0016 PK NEK