AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g01640 ATGAGCGCCGTCGATGTTGACACATTGATGTCCGATTTCCTCAACAACTCCGGCGGCGTTGCGCTTATCGACGGCGGCCTTGCCACGGAGCTTGAACGCTGCGGCGCCGACCTTAACGACCCTCTCTGGAGCGCCAAATGCCTCCTCACTTCCCCTCACCTTATTCGTCAGGTGCACCTTGATTATCTTGAAGCTGGTGCAGATATAATAATCACAGCTTCTTACCAGGCCACAATTCAAGGGTTTGAGGCTAAGGGATACTCTTCGGAAGAGGGTGAGTCCATGCTTAGAAAAAGTGTAGAAATTGCGTGTGACGCAAGGGATTTGTATAATCAAAGATGCAGTGAATCTTCAGTTGATTATTATACTGGCGATGGTAGGATTTTTAAAACTCGGCCTATTTTGGTTGCTGCATCTGTAGGGAGTTATGGGGCTTATCTGGCCGATGGTTCTGAATACAGTGGGGACTACGGTAAAGCAATGGATTTGGATTTTTTGAAAGATTTTCACCGAAGAAGGGTTCAAGTTTTAGCTGAATCTGGTGCTGATCTGATAGCATTTGAAACAATACCAAATAAGCTAGAAGCACAGGCTTTTTCTGAGCTTCTTGAGGAAGGCATAAATATTCCTGCATGGTTTGCGTTTAACTCAAAAGATGGTGTAAATGTGGTGAGTGGCGATTCCTTAGCCGAGTGTGCTGCAATTGCTGATTCATGCAAGAAAGTTGTCGCTGTAGGAATCAATTGCACACCTCCTAGATTCATTGGTGGTCTAATTTCCACTGTAAAAAAGGTGACAAATAAACCAATTCTTATATATCCTAACAGTGGTGAAAGCTATGATGCTCAACTAAAACAGTGGGTGCAAAACACTGGAGTTCTAGAAGAGGATTTTGTTTCATATGTGAACACATGGTGTGAGATGGGTGCATCACTTGTTGGAGGCTGCTGCAGAACTACGCCGGACACGATTAGAGCCATTTACAAGACTCTTCCCAGCAGATCATCTGCTTCTGCACCTGTTGTTGAAACTATTCAAAGTGAGTCGGGACTTGTGATGATCAAAACCGCATAG 1074 44.6 MSAVDVDTLMSDFLNNSGGVALIDGGLATELERCGADLNDPLWSAKCLLTSPHLIRQVHLDYLEAGADIIITASYQATIQGFEAKGYSSEEGESMLRKSVEIACDARDLYNQRCSESSVDYYTGDGRIFKTRPILVAASVGSYGAYLADGSEYSGDYGKAMDLDFLKDFHRRRVQVLAESGADLIAFETIPNKLEAQAFSELLEEGINIPAWFAFNSKDGVNVVSGDSLAECAAIADSCKKVVAVGINCTPPRFIGGLISTVKKVTNKPILIYPNSGESYDAQLKQWVQNTGVLEEDFVSYVNTWCEMGASLVGGCCRTTPDTIRAIYKTLPSRSSASAPVVETIQSESGLVMIKTA 357
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g01640 357 Pfam Homocysteine S-methyltransferase 22 330 IPR003726 -
Amtr12g01640 357 FunFam Homocysteine S-methyltransferase 10 330 - -
Amtr12g01640 357 Gene3D - 10 329 IPR036589 -
Amtr12g01640 357 ProSiteProfiles Homocysteine-binding domain profile. 9 331 IPR003726 -
Amtr12g01640 357 PANTHER ZGC:172121 13 333 IPR051486 GO:0008898(PANTHER)|GO:0009086(PANTHER)|GO:0033528(PANTHER)
Amtr12g01640 357 SUPERFAMILY Homocysteine S-methyltransferase 17 356 IPR036589 -
Amtr12g01640 357 PIRSF BHMT 286 355 IPR017226 GO:0008168(InterPro)|GO:0008270(InterPro)|GO:0009086(InterPro)
Amtr12g01640 357 PIRSF BHMT 9 205 IPR017226 GO:0008168(InterPro)|GO:0008270(InterPro)|GO:0009086(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g01640 K00547 homocysteine S-methyltransferase [EC:2.1.1.10]
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Event-related genes

Select Gene_1 Gene_2 Event_name
12938 Amtr06g01834 Amtr12g01640
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr11:55386171 Amtr12g01640 Amtr-Chr12:38883185 dispersed
Amtr Amtr-Chr10:4415792 Amtr12g01640 Amtr-Chr12:38883185 transposed
Amtr Amtr-Chr12:38883185 Amtr06g01834 Amtr-Chr6:36078917 wgd