AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arla10g00811 ATGTACAGGGACCGTGGTGGCTTGTCGTCGAGGTCGGAGATGGTGGGAGGAGGTGGAGCTGGGTCGTTGGATCGGAAACGAATCAATGATGCTTTGGATAAACATTTAGAGAAGACATCGTCGCCTTCGACTTCTAGGGTTTTGAATATGAACAATAAGGAGAAAGAGAAATTGTCTATGCCTTCAACGTCCACAGCCGGTGGTGGCAAATCGTTCCACCAGGACCTTCCTCGTGACAACCGTTCCTCTTCTACCATTACCACCACCAAAAACAAGTGCTCAGATGAGGAATCTGAAACTGACAGCGAGGAGTCTGATGTTAGTGGTTCTGATGAGGATGATACGTCTTGGATTTCATGGTTTTGCAATTTGCGAGGAAATGAATTTTTCTGCGAAGTTGATGATGAGTACATTCAAGATGATTTTAATCTTTGTGGATTAAGCAGTCAAGTTCCTTACTTTGATTATGCACTTGATCTAATTCTAGACGTGGAATCTTCTCATGGAGATATGTTCACTGAAGAGCAGAATGAACTTGTTGAATCAGCAGCAGAGATGTTGTATGGCTTGATACATGTCCGGTACATATTGACTACCAAGGGAATGTCTGCGATGTTGGAGAAGTACAAAAACTATGACTTCGGAAGGTGCCCAAGAGTTTATTGCTGCGGGCAGCCTTGCCTTCCTGTTGGCCAATCGGACATACCACGTTCAAGTACTGTGAAAATATACTGTCCCAAGTGTGAAGATATCTACTACCCTCGATCCAAATACCAAGGCAGTATCCTCATATTACATATCTATGTGCTTTTCATTCTGCTCTAA 825 43.52 MYRDRGGLSSRSEMVGGGGAGSLDRKRINDALDKHLEKTSSPSTSRVLNMNNKEKEKLSMPSTSTAGGGKSFHQDLPRDNRSSSTITTTKNKCSDEESETDSEESDVSGSDEDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYFDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTTKGMSAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILILHIYVLFILL 274
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arla10g00811 274 PRINTS Casein kinase II regulatory subunit family signature 116 132 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Arla10g00811 274 PRINTS Casein kinase II regulatory subunit family signature 213 234 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Arla10g00811 274 PRINTS Casein kinase II regulatory subunit family signature 188 209 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Arla10g00811 274 PRINTS Casein kinase II regulatory subunit family signature 235 256 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Arla10g00811 274 PRINTS Casein kinase II regulatory subunit family signature 133 147 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Arla10g00811 274 Pfam Casein kinase II regulatory subunit 116 259 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Arla10g00811 274 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 109 213 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Arla10g00811 274 MobiDBLite consensus disorder prediction 26 40 - -
Arla10g00811 274 SMART CK-II-beta-2 116 271 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Arla10g00811 274 FunFam Casein kinase II subunit beta 214 265 - -
Arla10g00811 274 MobiDBLite consensus disorder prediction 1 113 - -
Arla10g00811 274 FunFam Casein kinase II subunit beta 109 213 - -
Arla10g00811 274 ProSitePatterns Casein kinase II regulatory subunit signature. 217 248 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Arla10g00811 274 MobiDBLite consensus disorder prediction 41 70 - -
Arla10g00811 274 Gene3D - 214 262 - -
Arla10g00811 274 PANTHER CASEIN KINASE II SUBUNIT BETA 96 261 IPR000704 GO:0005737(PANTHER)|GO:0005956(PANTHER)|GO:0005956(InterPro)|GO:0019887(InterPro)|GO:0019887(PANTHER)
Arla10g00811 274 SUPERFAMILY Casein kinase II beta subunit 114 259 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arla10g00811 K03115 casein kinase II subunit beta
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
13512 Arla10g00811 Arla5g00919
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Arla Arla-Chr10:58769030 Arla11g01350 Arla-Chr11:75909232 dispersed
Arla Arla-Chr10:58769030 Arla5g00919 Arla-Chr5:24350590 wgd
Arla Arla-Chr10:58769030 Arla7g00374 Arla-Chr7:8048475 wgd