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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arla11g00194 ATGAAATTCGGCAAGCGGTTGAAGCAACACGTTCAAGAAACGTTGCCTGGGTGGCGGGATATGTATTTGAACTACAAAGATTTGAAGAAGCTCGTGAAGCTCATATCGGAGTGCGGGAAATCAGAGGCCGCGTTTGTGTATCTTTTGAATAATGAGATCGATAAGTTTAACTTGTTTTTCATGGAACAAGAAGAGGATTTCGTTATTCGTCATAAGGAGTTGCAACAAAGAATAAAGAGGGTGAAAGAGGGGGAACCATCTTCAGGAGAGTATGAAGAAGAGATGTCAAGAATCAGAAAAGACATAGTTGACTTTCATGGTGAAATGGTTCTTTTAGTCAACTATAGCAACATCAATTACACTGGAATGGCAAAGATTCTTAAGAAATACGACAAACGAACCGGAGGGCTATTGCGTTTGCCGTTCATCCAAAAGGTCTTGGAGCAACCTTTCTTCACCACGGACCTCATTTCGAAGCTTGTGAAAGAATGCGAAACCACAATCGACGAGCTTTTTCCAATGGTGGTGGTGGAGGAGGAGATGAAAGAGTCGACGGCAATCACGATGGCAGGAGAAGGGATTTTCAGAAACACGGTGGCGGCATTGATGACAATGAAAGAGATTAGGAAAGGGAGCTCGACTCAGAGTCATTTCTCTCTCCCGGCTTTAAATTTGCCGGATACTGAGCTTATTCGATCTTTTCAATTCAACGCCCCAATACCCATCATTTGA 732 43.03 MKFGKRLKQHVQETLPGWRDMYLNYKDLKKLVKLISECGKSEAAFVYLLNNEIDKFNLFFMEQEEDFVIRHKELQQRIKRVKEGEPSSGEYEEEMSRIRKDIVDFHGEMVLLVNYSNINYTGMAKILKKYDKRTGGLLRLPFIQKVLEQPFFTTDLISKLVKECETTIDELFPMVVVEEEMKESTAITMAGEGIFRNTVAALMTMKEIRKGSSTQSHFSLPALNLPDTELIRSFQFNAPIPII 243
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arla11g00194 243 Pfam SPX domain 93 145 IPR004331 -
Arla11g00194 243 Pfam SPX domain 1 36 IPR004331 -
Arla11g00194 243 CDD SPX-AtSPX1-like 2 133 - -
Arla11g00194 243 ProSiteProfiles SPX domain profile. 1 144 IPR004331 -
Arla11g00194 243 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 230 IPR031142 GO:0016036(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arla11g00194 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Arla Arla-Chr11:5688505 Arla8g01586 Arla-Chr8:84892384 dispersed
Arla Arla-Chr11:5688505 Arla6g00294 Arla-Chr6:9272733 transposed