AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arla11g00195 ATGGAATCAAAACGTCAATTGATTGATTCCCTCACCTCCCACATCTCTCTCTTCAATTCCCATTCACCATCTTCATCAAACCCTAACCCTAGATCCTCCATCCTCAAATGGTTTTCATCACTCACACCTCACCAACGTCAATCCCACCTCACCATCGTCGATCAATCCTTCACCCAGCTTCTAATCCACTTACAATTCAAACTCAACAACAACGGCCATGGTTCATTCATCATCCTCCCCGACATACCATCGTCCTCATCAAACCCTAACCTCCCATCCTTCTGTTTCCGCAAATCTCATGGTCTGTTAACCAGAATCAGCCACCTTTCAAGTCACGAAAACCGAATTCGTGAATCTGTACAGTTGTTCGATTCGAAAGAAGGTGAATTTTTCGGTTCTTGTTGTAGTTGTTTAGATTCGGTTACGGTTAGTAGAGATCTTGTTGAGAATGTGGATGCATTTGTTGAGGCGATGGATGGGGTTTCAAATGGGGAGTTTTTGAGAGGGGAGGAGAGTGTGTTGTTGGGATCATTGGATTGGGTGGAATTCAATTGGTTGAAGGCGAAAGGGTATTATAGTTTGGTGGGTTTCGTGGCGAATAGGTTGGAATTGGCTTTGAGGTTGTCGTGGTTGCATTCGAACGTTGGTAAGAAACGAGGGATGAAGTTGAAGGAGAAGTCTGTTTGTGCGGCTGCGGGTGTGGCGGCGAATGTGTATTGGAGGAAGAAAGGGTGTGTGGAATGGTGGATGAAGTTGGATGATTTAAAGAAGAAGGAAGTTTTTAGAATTGTATTGGGAAAAGCTGCAAGATTGTTGACTCATGACATTTTATACGGAAGAAGCAGTGGCTTGGAGGATGAGCTGCAGACCGCTAGTGGGAAAGACAAACGATCGCCGAGATACAGTCACCCTAGGTGGCACCACGAAACCGTTGAGACCCGTAGAGGGAAAGATATAGAATCAGAGCTCACTCTGTTTATTCCTCCACCTAATAAACCATCTTCGATAGCCCATAATTTCAATCGTCTATTAGTTGTTTGTGAGATTTCAACCATGTTACTAGCATTTGAGCATGGTCAATTCGATGAAGAAGCATTGTTCTTTAGCTCATTGGGGTCTGTTAGTACAATTTCTGATCGGATATTAAGGAGATTACGAGGTTTGCTCATGGTTGTTTCACTTGATTTCACTAAACTTGAGCTCCTTGAAGATCTAAGTTCAACCAAGTCCGTGAAGAAGCCAAAACAGAAACTTGTTTCTGGTAAGAAGGGGAAGGCACACGATGTAAACAAACCGATTCCTGTTCAACGATCTGTTAACAGTAATTCAGCTCCAAACAAGCCTGCCAAGGACGAGGGAGATAAGTTGGATGTTGTTCATGGCAGTGTAGTTCAGGAAAAGGATATAAAAAAAGCGACTCCATCCGCAGCGGTTGAAATGGAACATGGTGACGGAATGGTTAATGGAACAGTTCAAAGCACCTCAAAGAAGAGTAAGAGAACGAGAAAGAAACATAAGAAAGATGGTGTAAGTAACACAGTCAAAAGCATCGTTTCTCAAAACGCTGCTGTGAAATCCCGTTCTTCATCCGTTTCTCATGGTGAGTCTACACCTAATGAACACAAGTCAGAAATTATGCACAATGGCGCTTCCATTGTCGATCACAATCCAACAGAATCCACCACTCTTGCCACCTTAAATCAACCCCATCCCGAAAGAGGTATTGAAATTCAAGAGGACGGAAAAGAAAATCTTGATGTTATCGATGCTTCTAATGTTGAAAATGGTACTACCGTTGACGGTCAAAATGTTGACTTTATCGGCGGGGAGGATGTAAAGAAAGTGGAGGCACAATCTTTAGTTTCAGAAGCGACTCAAGTTACTAGAAAGGAAAAGAATCTTCCCCCGAATAAAGATCAAGATTCCGGAACCGTGAGCTCTTCAGGAAACCCGCCATATGAGTGGCCGAGTGCAGCCCCTCAATTATCATTTGTGAACTCACACCTCCCTGCCACCACCGATAGATTGCATCTAGACGTTGGTCATAACTGGCAAAACCATTTCCACCAGTCAGGGTTTGTGCACACGATGCATCAGGTTAGGAATCCACCGATTGAAAATGGATGCAAACCGATGCCAATGAGCTTGGATTGGCCGCCAATGGTTCACAGTATTAATGGATTGGTTCCGTCAATGGCTTGTAGCTACAACACAGGATATATGTCAAGAAGACAACCGTTTAAGCAAAGTTTTAGTGCTGGTGAATTTGTGGACTCTTCTCACATCGCGAATTCGCCGGAAATGGAGGAACACGATGGTCACTGGTTAGGTGAAGAAGATTTTGCGGTTTCCGGGATGGATTATAGTCAGTATTTTGGTGGTGGTGTGATGTATTGGGATTCTTCTGATCACCCGGTGGCTAGTTTTTCACGGCCGCCTTCTCTTAGTTCAGATGATAGCTCGTGGGCTTGGCGGGAAGCCGATATGAATAGGACCGTTGATGATATGGTTGCGTTTTCATCGTCGTATAGTACGAACGGTTTGACTTCACCCTCTGCTTCGTCTTTCTGCTCGCCTTTTGAACCACTTGGCTATGTTATACCTGGTGAGGTAACCGGAAAAGTGCTGCATTCTTCATCAACGATGACGGATTTATCCGAGGAGAATGTTTCTGGTTCTTTGGCCACTTTTCCTGGAGATATCGAAGCGAAAACCGGAGATTTGTTCCCGTATCCTATTTTGCGACCTATTATCATTCCAAATATATCGCGGGATAGATCACGGGAGTTTAAGCGGAATCACGAGCATAAAAGCCCGTGTGTTCCTCCTAGCAGGCGAGAAGAACCTCCGATTAAGAGACCACCTTCGCCGGTTGTACTTTGTGTTCCACGACCCTCCCCTGTTGGTGATTCCCGGAAACACCGAGGCTTTCCGACCGTTCGGTCTGGTAGCTCTAGCCCACGGCATTGGGGCGTGAAAGGTTGGTTTCATGACGGAATTAGTTTTGAAGAATGTTGTGTTAGAGTCGATGGAAGTGAAGTCGTTTGGCCTTCGTGGAGAAAGAAAAGTCTTTCAGCTCGTCAATTGACTCAGACTTTACCGGGAGCCATTTTGCAGGATCGACTCATTGCAATCTCGCAGCTAACACGTGATCAAGAACATCCCGATTTGGCGATTCCGCTTCAATCGCCGGAGTTACTCGATTGTTCTGTGCGAAAGGCGTCTCTTCCGGTGATGCACAGCCTCCTGAACGATGAAATGGACGCATTCTGCAAGCAGGTCGCCGGAGTAAACATGACTAGAAAGCCATATATCAACTGGGCGGTCAAACGTGTTACACGTTCACTTCAAGTCTTATGGCCTCGATCTCGAACCAACATCTTCGGTTCCAACGCAACCGGTTTATCCCTTCCAACAAGTGACGTCGATCTTGTAGTTTGCCTTCCTCCGGTTAGAAACTTAGAACCGATAAAAGAAGCCGGAATCTTGGAAGGTCGGAATGGAATCAAAGAAACATGTCTTCAACACGCCGCAAGATATCTCGTTAATCAAGAATGGGTAAAAAACGATTCTTTAAAAATCGTTGAGAATACTGCTATACCCATCATCATGCTCGTAGTCGAAGTCCCTTTGGATCTCATTGTTTCTTCTGCTTCAAATGTACCGTTGATGAGACGCCCTCCCTTGACTTCTGTTGACCAAGAAATTTCCGCTTCGAAGATGAGTACCGATGGTGGAAAAGACCCAGACGTGCAGTCAATTAGGATCGACATTAGCTTTAAAGCACCATCACACACCGGATTACAGACTACCGAACTGGTCAAAGAGCTCACGGAACAATTTCCGGCAGCCACCCCCCTCTCCTTGGTGCTAAAACAGTTTCTGGCTGATCGGAGCCTGGATCAATCTTATTCCGGTGGCCTGAGTTCCTATTGTTTGATTTTGTTGATCACCCGCTTTCTTCAACACGAGCACCATTATGGCCGGCCGATTAACCAGAATTTCGGGGGTCTTCTTATGGATTTCTTTTACTTTTTCGGGAACGTGTTTGATCCACGCCAGATGCGAATTTCCGTTCAGGGAAGTGGGGTTTATATAAATCGGGAAAGAGGGTATAGTATCGATCCGATTTATATCGACGATCCTTTGTTTCCTGCAAATAATGTGGGCAGGAATTGCTTTAGGATTCATCAATGCATAAAGGCATTTGCAGATGCTTATTCTACTTTGGAATATCAGCTTGCATCCCTTCCCGATAATTGTGATTCAAGCAACGGAGCTTCATCGTTGAAGCTACTCCCGCTAATTATTCCGAGTATTGCTCCGTCGTAG 4332 45.04 MESKRQLIDSLTSHISLFNSHSPSSSNPNPRSSILKWFSSLTPHQRQSHLTIVDQSFTQLLIHLQFKLNNNGHGSFIILPDIPSSSSNPNLPSFCFRKSHGLLTRISHLSSHENRIRESVQLFDSKEGEFFGSCCSCLDSVTVSRDLVENVDAFVEAMDGVSNGEFLRGEESVLLGSLDWVEFNWLKAKGYYSLVGFVANRLELALRLSWLHSNVGKKRGMKLKEKSVCAAAGVAANVYWRKKGCVEWWMKLDDLKKKEVFRIVLGKAARLLTHDILYGRSSGLEDELQTASGKDKRSPRYSHPRWHHETVETRRGKDIESELTLFIPPPNKPSSIAHNFNRLLVVCEISTMLLAFEHGQFDEEALFFSSLGSVSTISDRILRRLRGLLMVVSLDFTKLELLEDLSSTKSVKKPKQKLVSGKKGKAHDVNKPIPVQRSVNSNSAPNKPAKDEGDKLDVVHGSVVQEKDIKKATPSAAVEMEHGDGMVNGTVQSTSKKSKRTRKKHKKDGVSNTVKSIVSQNAAVKSRSSSVSHGESTPNEHKSEIMHNGASIVDHNPTESTTLATLNQPHPERGIEIQEDGKENLDVIDASNVENGTTVDGQNVDFIGGEDVKKVEAQSLVSEATQVTRKEKNLPPNKDQDSGTVSSSGNPPYEWPSAAPQLSFVNSHLPATTDRLHLDVGHNWQNHFHQSGFVHTMHQVRNPPIENGCKPMPMSLDWPPMVHSINGLVPSMACSYNTGYMSRRQPFKQSFSAGEFVDSSHIANSPEMEEHDGHWLGEEDFAVSGMDYSQYFGGGVMYWDSSDHPVASFSRPPSLSSDDSSWAWREADMNRTVDDMVAFSSSYSTNGLTSPSASSFCSPFEPLGYVIPGEVTGKVLHSSSTMTDLSEENVSGSLATFPGDIEAKTGDLFPYPILRPIIIPNISRDRSREFKRNHEHKSPCVPPSRREEPPIKRPPSPVVLCVPRPSPVGDSRKHRGFPTVRSGSSSPRHWGVKGWFHDGISFEECCVRVDGSEVVWPSWRKKSLSARQLTQTLPGAILQDRLIAISQLTRDQEHPDLAIPLQSPELLDCSVRKASLPVMHSLLNDEMDAFCKQVAGVNMTRKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPTSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLVNQEWVKNDSLKIVENTAIPIIMLVVEVPLDLIVSSASNVPLMRRPPLTSVDQEISASKMSTDGGKDPDVQSIRIDISFKAPSHTGLQTTELVKELTEQFPAATPLSLVLKQFLADRSLDQSYSGGLSSYCLILLITRFLQHEHHYGRPINQNFGGLLMDFFYFFGNVFDPRQMRISVQGSGVYINRERGYSIDPIYIDDPLFPANNVGRNCFRIHQCIKAFADAYSTLEYQLASLPDNCDSSNGASSLKLLPLIIPSIAPS 1443
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arla11g00195 1443 Gene3D - 1247 1434 - -
Arla11g00195 1443 MobiDBLite consensus disorder prediction 625 658 - -
Arla11g00195 1443 MobiDBLite consensus disorder prediction 468 542 - -
Arla11g00195 1443 MobiDBLite consensus disorder prediction 929 983 - -
Arla11g00195 1443 MobiDBLite consensus disorder prediction 288 307 - -
Arla11g00195 1443 SUPERFAMILY Nucleotidyltransferase 1084 1277 IPR043519 -
Arla11g00195 1443 Gene3D Beta Polymerase, domain 2 1101 1218 IPR043519 -
Arla11g00195 1443 MobiDBLite consensus disorder prediction 512 536 - -
Arla11g00195 1443 Pfam Cid1 family poly A polymerase 1334 1384 IPR002058 -
Arla11g00195 1443 MobiDBLite consensus disorder prediction 929 952 - -
Arla11g00195 1443 PANTHER POLY(A) RNA POLYMERASE 624 1440 IPR045862 GO:0003729(PANTHER)|GO:0004652(PANTHER)|GO:0005730(PANTHER)|GO:0031123(PANTHER)|GO:0031499(PANTHER)|GO:1990817(InterPro)
Arla11g00195 1443 MobiDBLite consensus disorder prediction 638 658 - -
Arla11g00195 1443 SUPERFAMILY PAP-OAS1 substrate-binding domain 1282 1411 - -
Arla11g00195 1443 MobiDBLite consensus disorder prediction 412 456 - -
Arla11g00195 1443 Pfam Poly(A) RNA polymerase, mitochondrial-like, central palm domain 1108 1204 IPR054708 -
Arla11g00195 1443 MobiDBLite consensus disorder prediction 289 307 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arla11g00195 K03514 non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]