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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arla1g00078 ATGGTAGTTGTTAAGGGTTTAAGCACAATCAAGTGTAGAGTTTCAGGAGAACGTGGTACCAGGAAGAGTGGTGGAGTTAGAAGTCTCAAGGTGTATGCAGAAAACGAGAAGGTTAAGAGTGATAGCAGGGATCATGTTGTTGCAGAAACCAAGCAAGTTTTAATTCGAAGGAAATCTATTCCAGTCAAAGCTGAAACCAGTCATATTCATGCCAATTGTCACAAGGTGGACATCAACAAGTTGGAGAAGATTCATGGGAAAAACATCAACTCTGGTCAAACTAAAGTAGGAAGAAAAGTGTTGGCGGATATCAGCAATTCACGGGGTAATATTCAGAAGAATGAAGCCTTTGATGGCTCCAAATCTGGGAAAGGTAAATTGGAAAAGATGGCCAGTTCACAAAGGGCTTCAGTTGGTACGAGAGCCAGGAATGCAAGTTCGTCAGGCAAACTGTCAATGGGAACGCATGTGGGAAGCCAGAGTGAAGCTATTGATGGCCGCCATACACTGGGTCGAGTAATCGGCACCAAGGATCTGAAGGTCTTTAAGGGTAAGCCAAGGCTAAAGGGTCAAGAAACTGTTGGTGATGCTACAAGGAAATCTTTAAGGAATTATAACCCACCACAAAGGAAATCTCTACCGGCTCTAAAACATGTCGACAAGGCGGATACATGTGATCTCCAGAAAGGAAATTTGGAAAACAAAGTGAAGAACAAGGAAAAATGTGGCTTCTCTGTTAAACCTAAAGTGGGCACGAAAGTTGTACCGCAAGTAACCAATGCCAGGGACCACCGTTGGAAGAATAGAGTTAGCGATGGATGTATAAAAATGTTGTCAGAAGGTCAACCAACAGTTGATGCACAGAGATTGTCTAGGAGATCAATGAAGCCAACTGTGAAAACTACAATTGGTATTCCCCGAGCTCAACGGGTATCAAAAAGCACCTCTGTTTCTAGCAAATCAACATTTGCAACTTCTGTTTCGTCTAAGAGGAAGGAGACTACATCAAGAGCTTCATTTTCTAAACATGCTGAATCTATAACTTGTGAGCAACCTGCAGTAATTTGTGAGCAACCTGCAGAAGGTGTTCCATCTGCTTGCAACAGCAACTTGGTCGCGAGTACATCAAATGTTACTGCCAAGGGGAAACCTGGCCGTCGAAAATCCTACACATCTTTGCTAATCGCAAGATCAACGCTGTTAAAGGAACATGGCAATGCCACCAAGCAGGAGATCCTACCCAATATCTATGATGATTGCAATCACCTTGAAGTTGCTGAATATATTGATGAGATATATCAACATTATTGGGTTACAGAAGCACATAATCAGCCACTAAAAAACTATATGGAGATCCCGACAGAAATCACGCCGCAAATGCGAGGCATACTGATCAATTGGCTCATAGAAGTACATTTGAAATTTGATTTGATGCAAGAGACACTTTATCTGATGGTCACCCTGTTAGACTGTTACTTGTCTGTTGCGACTATTAAGAAAAACGAAATGCAATTAGTTGGTCTCACTGCACTATTGCTAGCATCCAAGTATGAGGACTTCTGGCATCCAAAGGTTATGGAATTAATTGGCATTTCGGCAGAGGTATACACTAGAGAACAAATGCTTGGAATGGAAACAACGATTTTAAGGAAGCTGAACTTTCGTCTTAATCTGCCTACGCCCTATGTCTTTATGCTGAGATTTCTTAGAGCTGCTCAGGCAGACAAAAAGTTTGAAAATCTAGCATACTTCCTCATTGAGCTGTGCTTGGTGGAATATGATGCTTTACATTTCAAGCCATCACTGCTATGCGCATCAGCTATTTATGTTGCTAGATGTACCCTGCACTTGACCCCAGCATGGACCCCACTTCTATGCAAGCATTCTCACTATGAAGAGTTTCACATCAGGGATTGCGCCGAGATGATCTTGAGATTTCATCAAGCTGCAAGAACATCGATGTTGAAAGTAACGTATGAAAAATACATGGGCGCTGATAACTGCAGAGTTGCAACTATTAGACCTCTAGACAGGCTTCCAACTCCATAG 2049 42.22 MVVVKGLSTIKCRVSGERGTRKSGGVRSLKVYAENEKVKSDSRDHVVAETKQVLIRRKSIPVKAETSHIHANCHKVDINKLEKIHGKNINSGQTKVGRKVLADISNSRGNIQKNEAFDGSKSGKGKLEKMASSQRASVGTRARNASSSGKLSMGTHVGSQSEAIDGRHTLGRVIGTKDLKVFKGKPRLKGQETVGDATRKSLRNYNPPQRKSLPALKHVDKADTCDLQKGNLENKVKNKEKCGFSVKPKVGTKVVPQVTNARDHRWKNRVSDGCIKMLSEGQPTVDAQRLSRRSMKPTVKTTIGIPRAQRVSKSTSVSSKSTFATSVSSKRKETTSRASFSKHAESITCEQPAVICEQPAEGVPSACNSNLVASTSNVTAKGKPGRRKSYTSLLIARSTLLKEHGNATKQEILPNIYDDCNHLEVAEYIDEIYQHYWVTEAHNQPLKNYMEIPTEITPQMRGILINWLIEVHLKFDLMQETLYLMVTLLDCYLSVATIKKNEMQLVGLTALLLASKYEDFWHPKVMELIGISAEVYTREQMLGMETTILRKLNFRLNLPTPYVFMLRFLRAAQADKKFENLAYFLIELCLVEYDALHFKPSLLCASAIYVARCTLHLTPAWTPLLCKHSHYEEFHIRDCAEMILRFHQAARTSMLKVTYEKYMGADNCRVATIRPLDRLPTP 682
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arla1g00078 682 SUPERFAMILY Cyclin-like 559 678 IPR036915 -
Arla1g00078 682 Pfam Cyclin, N-terminal domain 431 557 IPR006671 -
Arla1g00078 682 SUPERFAMILY Cyclin-like 421 557 IPR036915 -
Arla1g00078 682 SMART cyclin-7 466 550 IPR013763 -
Arla1g00078 682 SMART cyclin-7 563 645 IPR013763 -
Arla1g00078 682 Gene3D - 551 680 - -
Arla1g00078 682 MobiDBLite consensus disorder prediction 133 159 - -
Arla1g00078 682 Gene3D - 446 550 - -
Arla1g00078 682 MobiDBLite consensus disorder prediction 308 342 - -
Arla1g00078 682 FunFam putative cyclin-B3-1 isoform X3 555 680 - -
Arla1g00078 682 SMART Cyclin-C-2 559 676 IPR004367 -
Arla1g00078 682 FunFam Cyclin N-terminal domain containing 2 446 554 - -
Arla1g00078 682 CDD CYCLIN-CCNB1-like-rpt1 425 554 - -
Arla1g00078 682 MobiDBLite consensus disorder prediction 111 164 - -
Arla1g00078 682 Pfam Cyclin, C-terminal domain 559 675 IPR004367 -
Arla1g00078 682 PANTHER CYCLINS 412 662 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arla1g00078 K21777 G2/mitotic-specific cyclin-B, other
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Arla Arla-Chr14:57215338 Arla1g00078 Arla-Chr1:1373751 dispersed
Arla Arla-Chr18:37798697 Arla1g00078 Arla-Chr1:1373751 dispersed
Arla Arla-Chr1:1373751 Arla3g00099 Arla-Chr3:3491622 dispersed
Arla Arla-Chr1:1373751 Arla11g00446 Arla-Chr11:27855266 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Arla1g00078 . 21 647 Core Cell Cycle gene family AT1G16330 44.495 3.80e-167 492.0
Arla1g00299 . 18 357 Core Cell Cycle gene family AT5G10270 53.959 1.54e-119 365.0
Arla1g00455 . 1 69 Core Cell Cycle gene family AT5G48820 58.442 4.51e-15 65.9
Arla1g00465 . 1 69 Core Cell Cycle gene family AT5G48820 56.41 3.67e-12 59.3
Arla1g00735 ACH 91 195 Core Cell Cycle gene family AT1G49620 43.86 1.53e-23 91.3
Arla1g00769 ACH 14 282 Core Cell Cycle gene family AT4G34160 53.846 1.14e-102 306.0
Arla1g00819 ACH 52 282 Core Cell Cycle gene family AT1G70210 41.25 1.32e-52 174.0
Arla1g01079 . 31 364 Core Cell Cycle gene family AT5G10270 53.412 5.72e-120 355.0
Arla1g01561 . 2 27 Core Cell Cycle gene family AT2G38620 80.769 1.49e-07 46.6
Arla1g02037 . 1 317 Core Cell Cycle gene family AT5G27620 60.188 4.32e-137 390.0
Arla1g02474 . 118 247 Core Cell Cycle gene family AT1G73690 40.714 1.66e-29 112.0
Arla1g02657 ACH 99 273 Core Cell Cycle gene family AT5G27620 27.027 6.22e-12 62.8
Arla1g02684 ACH 1 222 Core Cell Cycle gene family AT5G48820 45.267 1.39e-50 162.0
Arla1g02883 . 12 497 Core Cell Cycle gene family AT1G02970 57.715 0.0 548.0
Arla2g00315 . 1 505 Core Cell Cycle gene family AT5G10270 77.395 0.0 777.0
Arla2g01029 . 137 303 Core Cell Cycle gene family AT5G65420 49.133 8.14e-42 140.0
Arla2g01030 ACH 29 107 Core Cell Cycle gene family AT5G10440 47.5 3.16e-18 77.8
Arla2g01248 . 248 351 Core Cell Cycle gene family AT5G10270 36.538 3.37e-15 68.6
Arla2g01302 ACH 1 332 Core Cell Cycle gene family AT5G43080 56.16 1.06e-123 365.0
Arla2g01321 . 18 288 Core Cell Cycle gene family AT4G34160 48.601 8.91e-81 249.0
Arla2g01837 ACH 20 304 Core Cell Cycle gene family AT1G76540 24.625 5.48e-25 102.0
Arla2g01883 . 3 289 Core Cell Cycle gene family AT3G48750 47.475 7.39e-88 273.0
Arla2g01953 . 18 357 Core Cell Cycle gene family AT5G10270 53.079 3.24e-119 360.0
Arla2g02133 . 16 459 Core Cell Cycle gene family AT1G80370 52.371 2.15e-148 429.0
Arla11g00093 . 1 294 Core Cell Cycle gene family AT3G48750 84.354 0.0 527.0
Arla11g00128 . 20 307 Core Cell Cycle gene family AT1G76540 35.862 1.34e-56 189.0
Arla11g00446 . 27 434 Core Cell Cycle gene family AT5G06150 55.583 5.65e-153 439.0
Arla11g00653 . 18 363 Core Cell Cycle gene family AT5G10270 51.297 3.34e-118 357.0
Arla11g00778 . 1 290 Core Cell Cycle gene family AT3G48750 36.519 1.84e-64 213.0
Arla11g00850 ACH 76 244 Core Cell Cycle gene family AT5G27620 24.211 3.66e-06 47.4
Arla11g01332 . 2 250 Core Cell Cycle gene family AT4G28980 26.07 7.23e-13 70.5
Arla12g00328 ACH 19 304 Core Cell Cycle gene family AT1G76540 24.629 3.66e-27 108.0
Arla12g00410 . 18 363 Core Cell Cycle gene family AT5G10270 49.432 4.05e-113 346.0
Arla12g00478 ACH 1 353 Core Cell Cycle gene family AT5G43080 58.221 9.70e-149 422.0
Arla12g00751 . 18 357 Core Cell Cycle gene family AT5G10270 47.826 4.51e-102 322.0
Arla12g01127 ACH 42 302 Core Cell Cycle gene family AT5G65420 45.035 5.38e-69 217.0
Arla13g00169 . 20 307 Core Cell Cycle gene family AT1G76540 36.177 6.51e-58 191.0
Arla13g00278 . 86 128 Core Cell Cycle gene family AT1G73690 67.442 1.18e-14 66.6
Arla14g00344 . 20 391 Core Cell Cycle gene family AT5G10270 42.44 1.96e-92 291.0
Arla14g00453 . 4 237 Core Cell Cycle gene family AT5G02110 29.88 3.08e-28 111.0
Arla14g00711 ACH 124 228 Core Cell Cycle gene family AT3G48750 39.623 1.10e-20 84.0
Arla14g00749 ACH 11 367 Core Cell Cycle gene family AT5G67260 46.092 1.41e-98 295.0
Arla14g00771 . 512 609 Core Cell Cycle gene family AT1G16330 65.306 4.87e-42 144.0
Arla14g00815 ACH 177 222 Core Cell Cycle gene family AT5G48820 58.696 3.18e-16 72.8
Arla14g01006 . 18 358 Core Cell Cycle gene family AT5G10270 46.199 3.17e-105 323.0
Arla15g00248 . 18 366 Core Cell Cycle gene family AT5G10270 52.857 3.07e-119 358.0
Arla15g00458 . 18 385 Core Cell Cycle gene family AT5G10270 44.503 6.60e-105 327.0
Arla15g00598 . 75 272 Core Cell Cycle gene family AT5G27620 21.681 2.94e-06 47.4
Arla15g00734 . 4 314 Core Cell Cycle gene family AT4G37630 36.364 2.98e-47 159.0
Arla15g00816 . 1 459 Core Cell Cycle gene family AT1G44110 59.504 0.0 555.0
Arla15g00980 . 42 303 Core Cell Cycle gene family AT5G65420 47.601 5.67e-77 237.0
Arla15g01081 . 21 368 Core Cell Cycle gene family AT5G10270 45.938 4.30e-102 315.0
Arla17g00017 . 2 309 Core Cell Cycle gene family AT3G54180 82.468 0.0 533.0
Arla17g00207 . 4 237 Core Cell Cycle gene family AT5G02110 27.888 4.79e-25 102.0
Arla17g00247 . 1 429 Core Cell Cycle gene family AT5G06150 53.215 5.59e-146 424.0
Arla17g00413 . 1 294 Core Cell Cycle gene family AT3G48750 87.119 0.0 538.0
Arla17g00478 . 1 294 Core Cell Cycle gene family AT3G48750 35.452 3.14e-57 186.0
Arla17g00780 ACH 55 239 Core Cell Cycle gene family AT5G27620 24.227 3.57e-11 61.2
Arla17g00802 ACH 1 221 Core Cell Cycle gene family AT5G48820 42.063 6.97e-42 140.0
Arla18g00327 ACH 14 429 Core Cell Cycle gene family AT1G20610 54.524 2.83e-155 444.0
Arla18g00639 ACH 10 367 Core Cell Cycle gene family AT5G67260 45.055 8.95e-99 295.0
Arla18g00666 ACH 150 195 Core Cell Cycle gene family AT1G49620 67.391 5.91e-18 72.4
Arla18g00788 . 24 357 Core Cell Cycle gene family AT5G10270 48.802 1.51e-109 338.0
Arla3g00099 . 1 430 Core Cell Cycle gene family AT1G76310 60.998 3.10e-177 500.0
Arla3g00902 . 3 354 Core Cell Cycle gene family AT5G43080 49.728 1.41e-116 340.0
Arla3g01508 ACH 37 425 Core Cell Cycle gene family AT2G17620 58.853 9.24e-143 411.0
Arla3g01752 . 7 322 Core Cell Cycle gene family AT4G37630 34.557 5.34e-48 162.0
Arla3g01758 . 12 179 Core Cell Cycle gene family AT1G76540 32.184 3.73e-19 84.7
Arla3g01770 ACH 12 304 Core Cell Cycle gene family AT1G76540 29.773 1.03e-42 150.0
Arla3g01835 ACH 150 195 Core Cell Cycle gene family AT1G49620 60.87 8.64e-16 72.4
Arla3g01973 . 18 357 Core Cell Cycle gene family AT5G10270 46.471 2.10e-106 331.0
Arla3g02653 . 183 248 Core Cell Cycle gene family AT1G80370 50.0 1.26e-19 86.7
Arla3g02692 . 175 259 Core Cell Cycle gene family AT1G80370 53.488 3.97e-20 82.4
Arla4g00591 . 5 397 Core Cell Cycle gene family AT1G73690 76.19 0.0 606.0
Arla4g01374 . 11 315 Core Cell Cycle gene family AT1G20930 86.885 0.0 561.0
Arla4g01375 . 11 76 Core Cell Cycle gene family AT1G20930 84.848 5.45e-33 114.0
Arla4g01376 . 251 284 Core Cell Cycle gene family AT1G20930 70.588 3.89e-09 53.5
Arla4g01742 . 8 302 Core Cell Cycle gene family AT3G54180 25.223 4.70e-13 68.6
Arla4g02279 . 17 371 Core Cell Cycle gene family AT5G64960 45.33 4.80e-96 306.0
Arla5g00171 . 12 339 Core Cell Cycle gene family AT1G70210 59.172 3.33e-127 365.0
Arla5g00509 . 204 361 Core Cell Cycle gene family AT5G11300 35.185 1.09e-21 96.3
Arla5g01521 . 18 367 Core Cell Cycle gene family AT5G10270 51.282 1.12e-117 360.0
Arla5g01672 . 1 299 Core Cell Cycle gene family AT4G03270 43.548 1.92e-71 221.0
Arla6g00774 . 20 312 Core Cell Cycle gene family AT1G76540 34.237 3.88e-55 183.0
Arla6g01050 ACH 75 333 Core Cell Cycle gene family AT1G70210 40.684 2.45e-57 186.0
Arla6g01117 . 14 269 Core Cell Cycle gene family AT4G34160 51.128 2.64e-90 271.0
Arla6g01142 ACH 14 281 Core Cell Cycle gene family AT4G34160 50.36 3.36e-94 284.0
Arla6g01180 ACH 91 195 Core Cell Cycle gene family AT1G49620 42.857 4.99e-19 79.3
Arla7g00602 . 18 363 Core Cell Cycle gene family AT5G10270 50.712 7.37e-115 349.0
Arla7g00647 . 1 434 Core Cell Cycle gene family AT5G25380 46.721 8.35e-138 402.0
Arla7g00805 . 17 371 Core Cell Cycle gene family AT5G64960 44.78 1.61e-94 302.0
Arla7g00869 . 1 1009 Core Cell Cycle gene family AT3G12280 68.774 0.0 1388.0
Arla7g01025 . 18 367 Core Cell Cycle gene family AT5G10270 51.989 3.66e-118 359.0
Arla7g01792 . 5 287 Core Cell Cycle gene family AT3G48750 41.053 4.19e-74 227.0
Arla8g00925 . 18 366 Core Cell Cycle gene family AT5G10270 51.989 1.78e-118 362.0
Arla8g01127 . 223 365 Core Cell Cycle gene family AT1G76310 23.313 4.63e-06 46.6
Arla8g01255 . 109 181 Core Cell Cycle gene family AT3G54180 67.123 1.17e-27 102.0
Arla8g01344 . 42 96 Core Cell Cycle gene family AT5G10270 87.273 4.51e-28 102.0
Arla8g01650 . 1 478 Core Cell Cycle gene family AT4G28980 56.907 0.0 535.0
Arla9g00092 . 1 220 Core Cell Cycle gene family AT5G48820 44.915 1.21e-47 154.0
Arla9g00382 ACH 1 80 Core Cell Cycle gene family AT2G27970 90.0 2.16e-52 156.0
Arla9g01329 . 192 308 Core Cell Cycle gene family AT1G76540 28.369 2.22e-13 64.3
Arla9g01355 ACH 1 434 Core Cell Cycle gene family AT5G25380 47.992 1.82e-148 430.0
Arla9g01488 . 4 294 Core Cell Cycle gene family AT3G48750 38.644 1.09e-69 224.0
Arla9g01738 . 18 470 Core Cell Cycle gene family AT5G63610 78.867 0.0 726.0
Arla9g01878 . 42 479 Core Cell Cycle gene family AT5G10270 78.076 0.0 675.0
Arla10g00161 . 58 296 Core Cell Cycle gene family AT4G03270 42.739 4.59e-56 181.0
Arla10g00299 . 10 290 Core Cell Cycle gene family AT3G48750 35.395 1.02e-56 184.0
Arla10g01263 ACH 1 80 Core Cell Cycle gene family AT2G27970 91.463 1.30e-52 157.0
Arla10g01456 . 14 304 Core Cell Cycle gene family AT1G76540 26.1 2.83e-28 112.0