AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arla1g00094 ATGGGGAAGAAAAAACAGAAGCAGAAGGTGGTACTACCACCAGAGCTTCCACCAGAGGTGCCTGAGGATGAAATTGAAGTTTCGGATGAGGATTTGGACTTTGTCAATAGAAACAAAGAGTATGCTGGATTCGTGTCGAAATTGGACACTCAGTCAATTACGAGGCATGTGAATCGTGTTGCTGATGTGAAAGAAGATGCTCTCGAGTCTTTGTATGAGAAACGATCGAGGAAGAAATCATTAGCTACCGATAATATTCAGCTTGAAGTTGATCCTGTAGATGCTCTCCCTGTGAAGACCTTAGATGGACAAGTCTACTACAGGACAGCGCCGAAGGCCCCAAATAAATTCCAGAATGCACGTGATGAGGACGAGACTGTGGGTGAAAATGAAGATGTAGGCAGAGACAACGGTGTTATGAAGTTGACAAAAGCAGAGAAACGGGCAAAGATTAAAAAACTGAGAAAAGAGGCAAAAAAACAAGGGAAGGAGGTGGTGGAAGTAGAGGAAGTGGAACAAAGCTCTCAAGCTGAAGTTTTGGCTGAAGTTGAAAAGGATCTCTCAGCTGAAGAAGCCAATGAGAAGAGGAAGTTTAGGCTTGCTGAGATCGGAACAGCAATGCTCACAGATCCTGAAGGCAATATTAAATCCTTAAAAGAGATGCTTCAAATCTGTAAAGATGGAGATCAGGCTGTATCAATACTTGGTCTAAAGTCTTTGTTAGCTGTTTTCAAGGACATCATCCCTGGCAATCGCATTAGGCTACCTACTGAGAAGGAGCTAGCAATGGTTGTATCAAAGGATGTTAAGAAGACCCGCTTATATGAATCCACTCTCCTAACTGCGTACAAGGCATACCTCCAGAAGCTGATGGCGTTGGAGAAAGTACCAAGTTTCAAGCGTGTGGCCATTCGCTGCATCTGTACTCTGCTTGAGGCAAACCCACGCTTCAATTTTCGTGAGAGCTTGCTGGGAGTTGTCATGAATAATATAAGCTCCACAGATGATGTCATAAGGAAACTATGTTGCAACACAATTAAGTCACTTTTCACAAACGAGGGAAAGCATGGTGGTGAAGTTACTGTGGAGGCTGTTCAACTTATCGCTAATCTCGTAAAAGACCATGATTGTCATTTGCATCCTGATTCTGTTGAGGTTTTCTTGTCTCTCTCATTCGATGAGGATCTTCGGAAGCCTGAAGTTGCAAAACCTAACCGTAAGGCCAAAAACAAAAAATATAAAATAGGGAATAGAAACGAGGATAAAAATCAATTGCCAGGAAATGATAAAAAGAAGAGTAAGCAGGAAATGATCTCAAAGACAAGAGAGGAGGTCAAAGCGGAGTTCATGGCTGCATCATTTGCCCAAGATGCAATGGAAAAGAGGAGGATACAGTCTGATACTCTTTCTTCTGTATTTCAAACATACTTTCGTATTTTAAAGCATGCCATGCGGCCTCGACCGGAAGCAAATGGATTGCCAGTTGGTCCATTTGGGGAACATCCACTTCTTGCTCCTTGCCTGAATGGAATTGGGAAATTCTCTCATCTGATCGATCTGGATTTCATGGCTGATCTAATGAACTACCTTAGAAGGCTTGCTGGAGGAAGTATTGATGCCAATCGTCCATCAGAGAATTTTTCAAGCCGTTTGACGGTTTCTGAACGCCTAAGGTGCTGCATAGTCGCTTTCAAAGTGATGAAGAACAATCTTGATGCCTTAAACGTTGATTTACAAGACTTCTTCATTCAACTCTACAATCTCATACTTGAGTACAGGCCTGGAAGAGATCAAGGGGAAGTCTTAGCTGAAGCTATGAAGGTAATGTTATGTGATGATAGACAACATGACATGCAACGGGCTGCTGCATTCATTAAACGTCTGGCTTCATTCTCTTTGTGCTTTGGAGCTGCAGAATCCATGGCTGCATTGGTTACTCTAAAGCATCTCCTTCAGAAGAATGTCAAATGTCGCGATCTATTAGAAAATGATGCTGGAGGTGGATCACTTTCAGGTTCTATTGCGGTAAGACTCTCTTATGTTATTGTTTTGATGATAAATTATTATTCCTTCCGTTCCAAGAAAAAGAAAAAACACTTTATATATTAG 2109 41.92 MGKKKQKQKVVLPPELPPEVPEDEIEVSDEDLDFVNRNKEYAGFVSKLDTQSITRHVNRVADVKEDALESLYEKRSRKKSLATDNIQLEVDPVDALPVKTLDGQVYYRTAPKAPNKFQNARDEDETVGENEDVGRDNGVMKLTKAEKRAKIKKLRKEAKKQGKEVVEVEEVEQSSQAEVLAEVEKDLSAEEANEKRKFRLAEIGTAMLTDPEGNIKSLKEMLQICKDGDQAVSILGLKSLLAVFKDIIPGNRIRLPTEKELAMVVSKDVKKTRLYESTLLTAYKAYLQKLMALEKVPSFKRVAIRCICTLLEANPRFNFRESLLGVVMNNISSTDDVIRKLCCNTIKSLFTNEGKHGGEVTVEAVQLIANLVKDHDCHLHPDSVEVFLSLSFDEDLRKPEVAKPNRKAKNKKYKIGNRNEDKNQLPGNDKKKSKQEMISKTREEVKAEFMAASFAQDAMEKRRIQSDTLSSVFQTYFRILKHAMRPRPEANGLPVGPFGEHPLLAPCLNGIGKFSHLIDLDFMADLMNYLRRLAGGSIDANRPSENFSSRLTVSERLRCCIVAFKVMKNNLDALNVDLQDFFIQLYNLILEYRPGRDQGEVLAEAMKVMLCDDRQHDMQRAAAFIKRLASFSLCFGAAESMAALVTLKHLLQKNVKCRDLLENDAGGGSLSGSIAVRLSYVIVLMINYYSFRSKKKKKHFIY 702
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arla1g00094 702 Coils Coil 144 171 - -
Arla1g00094 702 Pfam Nucleolar complex-associated protein 196 286 IPR011501 -
Arla1g00094 702 Gene3D - 216 477 IPR011989 -
Arla1g00094 702 SUPERFAMILY ARM repeat 220 594 IPR016024 -
Arla1g00094 702 MobiDBLite consensus disorder prediction 1 23 - -
Arla1g00094 702 MobiDBLite consensus disorder prediction 401 439 - -
Arla1g00094 702 Pfam CBF-Mak21 family 557 665 IPR005612 -
Arla1g00094 702 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 4 669 IPR016903 GO:0003682(PANTHER)|GO:0005730(PANTHER)|GO:0006270(PANTHER)
Arla1g00094 702 MobiDBLite consensus disorder prediction 414 439 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arla1g00094 K14834 nucleolar complex protein 3
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Arla1g00094 . 1 678 Core DNA Replication Machinery family AT1G79150 56.133 0.0 738.0
Arla1g00578 ACH 235 341 Core DNA Replication Machinery family AT4G14700 31.193 3.24e-10 57.4
Arla1g00986 . 934 1289 Core DNA Replication Machinery family AT1G08840 25.622 1.21e-21 99.4
Arla1g01207 . 308 1083 Core DNA Replication Machinery family AT5G63960 28.154 1.20e-83 298.0
Arla1g01283 . 13 286 Core DNA Replication Machinery family AT1G21690 26.246 5.08e-13 70.1
Arla1g01332 . 888 1270 Core DNA Replication Machinery family AT1G08840 27.553 8.01e-33 135.0
Arla1g01867 . 1 727 Core DNA Replication Machinery family AT2G07690 79.076 0.0 1185.0
Arla1g02036 . 1 278 Core DNA Replication Machinery family AT3G02920 50.0 1.51e-93 276.0
Arla1g02065 . 406 778 Core DNA Replication Machinery family AT1G08130 26.716 1.37e-28 122.0
Arla1g02132 ACH 184 267 Core DNA Replication Machinery family AT1G77320 40.0 1.15e-10 62.8
Arla1g02318 . 1 106 Core DNA Replication Machinery family AT4G18590 65.094 4.58e-50 152.0
Arla1g02669 . 1 596 Core DNA Replication Machinery family AT3G25100 72.167 0.0 869.0
Arla1g02922 . 1053 1322 Core DNA Replication Machinery family AT4G02110 63.736 1.66e-116 394.0
Arla1g02927 . 1 716 Core DNA Replication Machinery family AT4G02060 84.078 0.0 1271.0
Arla2g00107 . 883 1294 Core DNA Replication Machinery family AT1G08840 27.651 7.15e-39 155.0
Arla2g00325 . 20 474 Core DNA Replication Machinery family AT3G54710 29.81 2.09e-42 155.0
Arla2g00332 . 1 124 Core DNA Replication Machinery family AT1G09815 54.032 1.68e-43 137.0
Arla2g00333 . 14 733 Core DNA Replication Machinery family AT5G16690 48.844 0.0 660.0
Arla2g00483 . 153 552 Core DNA Replication Machinery family AT5G08020 58.25 0.0 523.0
Arla2g00698 . 4 518 Core DNA Replication Machinery family AT4G29910 60.531 0.0 621.0
Arla2g00863 . 410 539 Core DNA Replication Machinery family AT5G08020 54.615 4.07e-47 163.0
Arla2g00973 ACH 397 601 Core DNA Replication Machinery family AT5G08020 50.0 1.76e-70 224.0
Arla2g01196 . 1 337 Core DNA Replication Machinery family AT1G21690 78.932 0.0 562.0
Arla2g01467 . 151 369 Core DNA Replication Machinery family AT5G08020 60.731 1.98e-99 299.0
Arla2g01492 . 370 601 Core DNA Replication Machinery family AT5G08020 49.367 1.35e-74 236.0
Arla2g02385 . 1014 1289 Core DNA Replication Machinery family AT1G08840 30.132 3.19e-22 103.0
Arla11g00131 . 1 260 Core DNA Replication Machinery family AT5G26680 28.897 6.13e-19 87.8
Arla12g00216 ACH 35 496 Core DNA Replication Machinery family AT1G07270 58.351 0.0 538.0
Arla12g00535 . 12 361 Core DNA Replication Machinery family AT2G37560 65.242 1.08e-175 491.0
Arla12g00722 . 1 601 Core DNA Replication Machinery family AT5G08020 67.897 0.0 902.0
Arla12g00880 . 252 601 Core DNA Replication Machinery family AT5G08020 42.507 1.55e-94 290.0
Arla12g00947 ACH 1014 1294 Core DNA Replication Machinery family AT1G08840 29.492 4.15e-19 92.0
Arla12g01053 . 2 883 Core DNA Replication Machinery family AT1G77320 46.113 0.0 771.0
Arla12g01118 . 228 633 Core DNA Replication Machinery family AT4G19130 20.833 3.46e-14 73.6
Arla13g00118 . 4 534 Core DNA Replication Machinery family AT4G29910 61.581 0.0 647.0
Arla13g00123 . 4 523 Core DNA Replication Machinery family AT4G29910 59.662 0.0 609.0
Arla13g00361 . 2 349 Core DNA Replication Machinery family AT5G27740 34.054 9.50e-61 205.0
Arla13g00457 . 342 397 Core DNA Replication Machinery family AT3G09660 71.429 3.94e-23 92.0
Arla13g00512 . 1 774 Core DNA Replication Machinery family AT5G46280 68.535 0.0 1069.0
Arla13g00599 . 1 182 Core DNA Replication Machinery family AT3G55490 60.44 9.60e-82 238.0
Arla13g00737 . 1 390 Core DNA Replication Machinery family AT5G26680 79.54 0.0 652.0
Arla14g00441 . 1 947 Core DNA Replication Machinery family AT1G77320 44.239 0.0 756.0
Arla14g00463 . 2 349 Core DNA Replication Machinery family AT5G27740 37.921 4.54e-79 256.0
Arla14g00545 . 153 776 Core DNA Replication Machinery family AT1G08130 39.596 5.24e-169 524.0
Arla15g00271 . 153 206 Core DNA Replication Machinery family AT5G22110 66.667 1.41e-19 79.7
Arla15g00977 . 351 443 Core DNA Replication Machinery family AT5G08020 52.688 2.03e-29 107.0
Arla15g00978 . 160 251 Core DNA Replication Machinery family AT5G08020 53.261 1.04e-26 100.0
Arla15g01054 ACH 1014 1294 Core DNA Replication Machinery family AT1G08840 31.186 9.85e-19 90.9
Arla15g01057 . 153 393 Core DNA Replication Machinery family AT5G08020 29.218 4.82e-22 97.4
Arla16g00269 . 207 601 Core DNA Replication Machinery family AT5G08020 43.291 2.97e-113 339.0
Arla16g00294 . 1 451 Core DNA Replication Machinery family AT5G41880 64.77 0.0 638.0
Arla16g00632 . 35 495 Core DNA Replication Machinery family AT1G07270 59.448 0.0 550.0
Arla16g01152 . 56 164 Core DNA Replication Machinery family AT2G24490 31.25 1.33e-09 53.9
Arla17g00448 . 1 439 Core DNA Replication Machinery family AT2G42120 77.904 0.0 727.0
Arla18g00009 . 1 831 Core DNA Replication Machinery family AT5G44635 73.109 0.0 1277.0
Arla18g00228 . 1 255 Core DNA Replication Machinery family AT5G26680 25.781 3.40e-14 73.2
Arla18g00506 . 242 569 Core DNA Replication Machinery family AT5G08020 51.952 2.09e-117 353.0
Arla18g00507 . 242 543 Core DNA Replication Machinery family AT5G08020 48.265 1.71e-101 311.0
Arla3g00008 ACH 13 312 Core DNA Replication Machinery family AT1G21690 25.407 3.06e-17 82.0
Arla3g00104 . 505 564 Core DNA Replication Machinery family AT5G46280 46.774 3.48e-09 52.4
Arla3g00221 . 151 396 Core DNA Replication Machinery family AT5G08020 59.919 2.26e-103 311.0
Arla3g00397 . 18 526 Core DNA Replication Machinery family AT5G22110 68.164 0.0 729.0
Arla3g01432 ACH 1011 1267 Core DNA Replication Machinery family AT1G08840 26.415 5.23e-12 68.6
Arla3g01433 ACH 888 1267 Core DNA Replication Machinery family AT1G08840 26.573 1.19e-18 90.5
Arla3g01438 ACH 1015 1267 Core DNA Replication Machinery family AT1G08840 27.306 6.71e-15 77.8
Arla3g01701 . 107 178 Core DNA Replication Machinery family AT2G31270 37.5 2.12e-07 47.0
Arla3g01823 . 11 1522 Core DNA Replication Machinery family AT5G67100 57.905 0.0 1733.0
Arla3g01886 . 111 199 Core DNA Replication Machinery family AT4G02110 38.889 3.21e-14 73.9
Arla3g02029 . 1127 1245 Core DNA Replication Machinery family AT4G02110 29.839 1.28e-06 50.1
Arla3g02045 . 141 251 Core DNA Replication Machinery family AT5G26680 37.838 8.13e-13 70.5
Arla3g02303 . 16 809 Core DNA Replication Machinery family AT4G14700 62.708 0.0 1008.0
Arla3g02390 . 1 354 Core DNA Replication Machinery family AT5G27740 87.288 0.0 657.0
Arla3g02628 . 298 574 Core DNA Replication Machinery family AT5G45400 23.86 9.04e-13 68.6
Arla3g02706 . 1 296 Core DNA Replication Machinery family AT2G25100 73.064 1.61e-167 464.0
Arla3g03567 . 1 209 Core DNA Replication Machinery family AT3G12530 59.809 3.97e-91 264.0
Arla4g00364 . 2 220 Core DNA Replication Machinery family AT5G49010 56.502 1.13e-86 254.0
Arla4g00525 . 129 318 Core DNA Replication Machinery family AT5G26680 25.743 2.90e-09 57.4
Arla4g00574 . 64 318 Core DNA Replication Machinery family AT5G26680 29.167 1.85e-17 83.2
Arla4g00892 . 1015 1268 Core DNA Replication Machinery family AT1G08840 29.964 3.47e-16 84.0
Arla4g01612 ACH 978 1268 Core DNA Replication Machinery family AT1G08840 30.844 9.05e-20 95.1
Arla4g01824 . 1 182 Core DNA Replication Machinery family AT3G55490 61.538 1.65e-82 240.0
Arla4g02074 . 1 282 Core DNA Replication Machinery family AT1G26840 64.912 2.14e-127 362.0
Arla4g02327 . 1 444 Core DNA Replication Machinery family AT1G67320 67.77 0.0 658.0
Arla5g00524 . 826 1288 Core DNA Replication Machinery family AT1G08840 31.021 1.05e-49 185.0
Arla5g00625 . 182 956 Core DNA Replication Machinery family AT5G22010 68.454 0.0 1045.0
Arla5g01013 . 1 1294 Core DNA Replication Machinery family AT1G08840 54.115 0.0 1381.0
Arla5g01107 . 9 287 Core DNA Replication Machinery family AT1G21690 22.148 4.88e-13 69.7
Arla5g01586 . 17 396 Core DNA Replication Machinery family AT2G20980 51.861 1.81e-126 369.0
Arla6g00049 . 1 638 Core DNA Replication Machinery family AT2G06510 70.69 0.0 942.0
Arla6g00329 . 1 443 Core DNA Replication Machinery family AT1G67320 68.584 0.0 667.0
Arla6g00422 . 170 284 Core DNA Replication Machinery family AT5G08020 64.348 5.64e-50 165.0
Arla6g01264 ACH 235 341 Core DNA Replication Machinery family AT4G14700 25.688 1.10e-07 50.1
Arla6g01269 ACH 1 847 Core DNA Replication Machinery family AT2G16440 73.31 0.0 1254.0
Arla6g01415 . 337 433 Core DNA Replication Machinery family AT5G22010 33.898 1.78e-07 52.4
Arla6g01517 . 1 201 Core DNA Replication Machinery family AT1G80190 59.204 3.10e-87 253.0
Arla7g00136 . 12 332 Core DNA Replication Machinery family AT1G63160 91.9 0.0 619.0
Arla7g00274 . 1 417 Core DNA Replication Machinery family AT2G01120 64.748 0.0 565.0
Arla7g00690 . 1 838 Core DNA Replication Machinery family AT5G45400 49.823 0.0 788.0
Arla7g00802 . 4 620 Core DNA Replication Machinery family AT1G67630 56.058 0.0 701.0
Arla7g00874 . 20 928 Core DNA Replication Machinery family AT1G44900 77.199 0.0 1405.0
Arla7g00875 . 20 121 Core DNA Replication Machinery family AT1G44900 57.692 1.61e-23 94.0
Arla7g00937 . 1 596 Core DNA Replication Machinery family AT3G25100 72.02 0.0 870.0
Arla7g00980 . 1 369 Core DNA Replication Machinery family AT1G77470 76.344 0.0 577.0
Arla7g01159 . 298 514 Core DNA Replication Machinery family AT5G45400 23.288 7.21e-08 50.8
Arla8g00475 ACH 245 341 Core DNA Replication Machinery family AT4G14700 32.323 5.64e-10 57.0
Arla8g00762 . 14 643 Core DNA Replication Machinery family AT2G14050 71.719 0.0 943.0
Arla8g00985 . 268 444 Core DNA Replication Machinery family AT5G08020 53.672 3.65e-59 193.0
Arla8g01239 ACH 184 269 Core DNA Replication Machinery family AT1G77320 41.573 4.73e-12 67.0
Arla9g00430 . 1 2156 Core DNA Replication Machinery family AT1G08260 69.946 0.0 3165.0
Arla9g00652 . 9 763 Core DNA Replication Machinery family AT3G09660 67.696 0.0 1018.0
Arla9g01267 . 1 398 Core DNA Replication Machinery family AT5G41880 66.337 0.0 582.0
Arla9g01656 . 888 1283 Core DNA Replication Machinery family AT1G08840 30.717 6.58e-38 153.0
Arla9g01744 . 44 1095 Core DNA Replication Machinery family AT5G63960 83.633 0.0 1858.0
Arla10g00063 . 245 337 Core DNA Replication Machinery family AT4G14700 31.183 8.65e-11 59.3
Arla10g00476 . 1 228 Core DNA Replication Machinery family AT2G24490 42.979 5.53e-58 182.0
Arla10g00678 . 351 586 Core DNA Replication Machinery family AT5G08020 37.344 6.85e-45 154.0
Arla10g01027 . 393 610 Core DNA Replication Machinery family AT5G22010 28.916 4.67e-15 78.2
Arla10g01253 . 1 790 Core DNA Replication Machinery family AT1G08130 63.68 0.0 1048.0
Arla10g01797 . 32 262 Core DNA Replication Machinery family AT1G77470 24.901 6.81e-10 59.3