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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arla1g00116 ATGGAAATGGTGTTTTGTTCAAAACCCCATTGCTTTCATTCCCAACTACAACAATATCATCACCAGCAACAATCCATAGTTTCACCTCTTTCTTCCTTTCAATACAAAAAAACCCTTACGTTTACTCCTTCCACAATTCTGTTTGCCGCCAAAAAAACAAGGGTTATTTCTCATCTTGATTCTAGAGTTAATGGTGCTCTTTCATCTGACCCGGAATCTAGCTTCCTTGACAGGCAAAAAGCATTGGAAGCTGCAATGAATGATATCAACAGCTCATTCGGGAAAGGAAGCGTGACAAGGCTCGGAAGTCTTGGTGGAGCTCTTGTGGAAACATTCCCAAGTGGCTGTCTCTCCTTAGACCTTGCGTTAGGTGGTGGCCTGCCTAAAGGGAGAATTGTCGAGATTTATGGACCTGAAAGTAGTGGAAAGACCACCTTGGCACTACATGCCATTGCAGAAGTTCAGAAGCTAGGAGGCAATGCGATGCTTGTTGATGCAGAGCACGCGTTCGATCCATCCTATTCTAAAGCACTTGGAGTAGATGTAGAGAATTTGATCGTTTGCCAACCAGACAACGGAGAGATGGCACTCGAGATCGCTGACCGTATGTGTAGATCAGGTGCTGTTGATCTCATTTGCATCGACTCGGTCTCAGCTCTTACCCCACGAGCTGAGATTGAAGGGGAGATTGGAATGCAGCAAATGGGTTTGCAAGCGCGTCTTATGAGTCAAGCATTGCGTAAGATGTCAGGCAATGCATCCAAAGCTGGATGCACTCTTATCTTTCTTAACCAAATAAGATACAAGATCGGAGTATATTATGGGAATCCGGAAGTTACAAGTGGAGGTATTGCCTTGAAGTTTTTTGCATCTGTTCGACTTGAAATACGCCCTATAGGGAAGATAAAGTCTGTCAAAGGTGATGAGGACGTCGGGGTTAAGGTCCGAGTAAGAGTTCAAAAGAGTAAGGTTTCTAGACCATACAAGCAAGCAGAGTTTGAAATTATATTTGGAGAGGGAGCAAGCAAATTGGGATGCATATTGGACTGTGCTGAAGTGATGGACATTGTGTTAAAGAAGGGTTCTTGGTACAGCTATCGAGATCATAGGTTGGGGCAAGGAAGAGACAGGGCATTGCAGTACTTAAGAGAAAACCTTCCGCTTTGTGATGAAATTGAAAAGATTGTGCGGTCAGCAATGATGGAGGGAACTGGGCAAGCTGTTACTTAG 1230 44.23 MEMVFCSKPHCFHSQLQQYHHQQQSIVSPLSSFQYKKTLTFTPSTILFAAKKTRVISHLDSRVNGALSSDPESSFLDRQKALEAAMNDINSSFGKGSVTRLGSLGGALVETFPSGCLSLDLALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRPIGKIKSVKGDEDVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGASKLGCILDCAEVMDIVLKKGSWYSYRDHRLGQGRDRALQYLRENLPLCDEIEKIVRSAMMEGTGQAVT 409
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arla1g00116 409 Hamap Protein RecA [recA]. 78 403 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Arla1g00116 409 ProSiteProfiles RecA family profile 1. 108 266 IPR020588 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0140664(InterPro)
Arla1g00116 409 ProSiteProfiles RecA family profile 2. 271 346 IPR020587 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Arla1g00116 409 ProSitePatterns recA signature. 285 293 IPR020584 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Arla1g00116 409 NCBIfam recombinase RecA 77 397 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Arla1g00116 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 340 IPR027417 -
Arla1g00116 409 CDD RecA 109 343 - -
Arla1g00116 409 FunFam DNA repair protein recA 1 like 107 402 - -
Arla1g00116 409 PANTHER RECA 63 404 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Arla1g00116 409 Pfam recA bacterial DNA recombination protein 80 341 IPR049428 -
Arla1g00116 409 PRINTS RecA protein signature 237 266 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Arla1g00116 409 PRINTS RecA protein signature 199 228 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Arla1g00116 409 PRINTS RecA protein signature 282 310 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Arla1g00116 409 PRINTS RecA protein signature 317 346 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Arla1g00116 409 PRINTS RecA protein signature 165 194 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Arla1g00116 409 PRINTS RecA protein signature 371 388 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Arla1g00116 409 SUPERFAMILY RecA protein, C-terminal domain 342 398 IPR023400 -
Arla1g00116 409 Pfam RecA C-terminal domain 345 400 IPR049261 -
Arla1g00116 409 Gene3D - 107 403 IPR027417 -
Arla1g00116 409 SMART AAA-5 129 300 IPR003593 GO:0016887(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arla1g00116 K03553 recombination protein RecA
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Arla Arla-Chr1:2625207 Arla1g02609 Arla-Chr1:173266443 dispersed