AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arla1g00415 | ATGGAGGTAACCAATGTGAGTGAGTATCAGGCAATTGCCAAGGAGAAGTTGCCAAAGATGGTCTATGACTACTATGCTTCTGGTGCTGAGGACCAGTGGACTCTAGAAGAGAACCGAAATGCTTTCGCAAGAATCCTGTTTAGGCCCCGGATTCTTATTGATGTGAGCAAGATAGACATGACCACAACCATTTTGGGATTCAAGGTGTCTATGCCCATTCTGATAGCCCCAACAGCAATGCAGAAGATGGCTCACCCTGAAGGTGAATATGCAACAGCTAGAGCCGCATCTGCAGCTGGGACTATTATGACACTGTCATCGTGGGCGACGTCTAGTGTTGAGGAGGTTGCTTCAACAGGACCTGGAATCCGCTTCTTCCAGCTTTACGTGTACAAGAACCGTAACGTTGTGGCTCAACTTGTGAAAAGAGCTGAACGAGCCGGCTTCAAAGCTATAGCTCTAACAGTTGACACACCAAGACTCGGGCGTCGAGAAGCTGATATCAAAAACAGATTCACTTTACCGCCATTTTTGACATTGAAGAACTTTGAGGGTCTGGACCTTGGCAAGATGGATGAAGCTAACGACTCTGGATTAGCTTCTTACGTTGCGGGTCAGATCGACCGCACTTTGAGCTGGAAGGATGTGAAGTGGCTTCAGACGATTACTGCAATGCCAATCCTTGTGAAGGGTGTGATCACTGCCGAGGATACAAGGTTAGCTATTCAAGCTGGAGCAGCCGGTATTATTGTATCCAATCATGGAGCCCGTCAACTTGATTACGTCCCGGCCACCATCATGGCTTTGGAGGAGGTTGTGAAAGCTGCACAAGGGCGTGTACCTGTATTCTTGGATGGTGGTGTCCGGCGTGGTACAGATGTTTTCAAGGCTCTGGCGCTTGGAGCTTCCGGCATATTTATTGGAAGACCTGTGGTGTTTTCCTTGGCTGCTGAAGGAGAAGCTGGAGTGAGGAAAGTGCTTCAGATGTTACGCGAAGAATTCGAACTAACCATGGCATTAAGTGGTTGTACCTCGCTCAAACAGATTACCCGAAATCACATTGTCACCGAGTGGGATGCTCCTAGGGCTCGTCCTGCACCAAGGTCAGATAATAGCCACATTATCAGTTGGCCTTCTGAACCTTTGCCTTCTGAATCACTTCAATACCTTCTGATCCCTTATGCAAACATCAGAAGACTGTTTCAGCTTCAGTGA | 1215 | 47.98 | MEVTNVSEYQAIAKEKLPKMVYDYYASGAEDQWTLEENRNAFARILFRPRILIDVSKIDMTTTILGFKVSMPILIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVKWLQTITAMPILVKGVITAEDTRLAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCTSLKQITRNHIVTEWDAPRARPAPRSDNSHIISWPSEPLPSESLQYLLIPYANIRRLFQLQ | 404 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arla1g00415 | 404 | PIRSF | Al-hdrx-acd-dh | 1 | 359 | IPR012133 | GO:0010181(InterPro)|GO:0016491(InterPro) | |
| Arla1g00415 | 404 | ProSiteProfiles | FMN-dependent alpha-hydroxy acid dehydrogenase domain profile. | 1 | 359 | IPR037396 | - | |
| Arla1g00415 | 404 | CDD | alpha-hydroxyacid-oxid-FMN | 7 | 351 | IPR012133 | GO:0010181(InterPro)|GO:0016491(InterPro) | |
| Arla1g00415 | 404 | SUPERFAMILY | FMN-linked oxidoreductases | 2 | 356 | - | - | |
| Arla1g00415 | 404 | PANTHER | S -2-HYDROXY-ACID OXIDASE-RELATED | 2 | 353 | - | GO:0005777(PANTHER)|GO:0008891(PANTHER) | |
| Arla1g00415 | 404 | FunFam | peroxisomal (S)-2-hydroxy-acid oxidase GLO1 | 1 | 366 | - | - | |
| Arla1g00415 | 404 | Pfam | FMN-dependent dehydrogenase | 13 | 355 | IPR000262 | GO:0016491(InterPro) | |
| Arla1g00415 | 404 | Gene3D | Aldolase class I | 1 | 369 | IPR013785 | - | |
| Arla1g00415 | 404 | ProSitePatterns | FMN-dependent alpha-hydroxy acid dehydrogenases active site. | 252 | 258 | IPR008259 | GO:0016491(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arla1g00415 | K11517 | (S)-2-hydroxy-acid oxidase [EC:1.1.3.15] | ||||
| Arla1g00415 | K00101 | L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 16095 | Arla1g00415 | Arla6g01279 | |
| 16096 | Arla1g00415 | Arla8g00360 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Arla | Arla-Chr5:15416858 | Arla1g00415 | Arla-Chr1:10366556 | transposed | |
| Arla | Arla-Chr6:94889694 | Arla1g00415 | Arla-Chr1:10366556 | transposed | |
| Arla | Arla-Chr1:10366556 | Arla6g01279 | Arla-Chr6:87013812 | wgd | |
| Arla | Arla-Chr1:10366556 | Arla8g00360 | Arla-Chr8:8391261 | wgd |