AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arla1g00419 | ATGGAAGACGATCTCCTCTGCCCTCAAGATTCCGATCTCGATCTCAGTTTCACAAGCTCCACCTCCATCGCCACCACCAGTGCCCGCTCCAGTCTAGCTCGTTCCAGTTTATGTCTTAGTTTCAACGATTCCACTCGCATCTCCTCCGCCGCCTCCTCCACCGCCGTACCTAACCTCCACCCGCGCCCTCACCGCAAATCCGATGCCAATTGGTCCGCTATCAGAGCCGCCACTAATCTCTCCTCCGACGGCACTCTCCACCTCCGCCACCTCAAGCTCGTTCGCCATGTCGGATCTGGAAATCTCGGCCGTGTGTTCCTTTGCCGTCTGAGAGATTACGATCACGCAAGTTTTGCTCTCAAAGTTGTTGATAACAACTCACTCACGTCGAAGAAGCTTTCACATGTGCAGACGGAGGCTCGGATCCTGTCGTCGCTGGACCACCCGTTCCTCCCTACGCTCTACGCTCATTTGGAAGTCTCTCATTACACTTGCTTCCTGATCGATTTCTGTCCTAACGGAGACCTCCATTCCTTGATCCGTAAACAACCTAACTACCGATTACCGATTGATTCCGTTAGGTTCTTCGCCGCCGAGGTTTTGGTAGCGCTCGAATATCTCCACTCGCTCGGGATCGTGTACCGTGATCTGAAGCCGGAAAACATTTTGATCCGTGAAGACGGTCACATTATGTTGTCAGATTTCGATTTATGCTTCAACGCCGACGTCGTTCCAAAGCTCGATAACCGGATCGAAGGCCGGACCGGTACGAAACAATATCGTAGCTATTGCTGCTATTACGGCGGCGATAGGCGGAGACGTACGGAAGAAAAAACGATAACGGAGTTTGTAGCGGAGCCGACGACGGCTTTCTCGAGATCGTGCGTCGGAACTCACGAGTATTTGGCTCCGGAGTTGATCACCGGCAACGGTCACGGCAGCGGCGTCGACTGGTGGGCGTTCGGAGTGTTGATTTACGAATTGTTGTACGGACGGACGCCGTTTAGAGGAGGATGTAAAGAGTCAACCCTGCGCAATATAGCATCGAGCAGTGAAGTAAGGTTTGATGAAGTGAGCACAAGAGGTATGGCGCAGGCTAAGGATTTGATAGAGAAGTTGCTGGTAAAAGATCCACGGGGGCGGTTAGGATGCGCCAGGGGTGCGACGGATATTAAACGGCACCCGTTCTTCGACGGCATTAAGTGGCCGTTGATCCGGATGTACCGGCCGCCGGAGGTGCGGGGGATGGCGGTGAAGAGGAATAGTAGGGCGCACGTTAGTAACGTGAGCGGGTGGTCATCGTCCCATAAGAAAAGGCGTTGGTTATGGAAGGGGCTTAGTTGTATATTTCTGAAAAATAAGGGGTCTAAACGTATGGGAAAGCCTTCAGAAATGGTGCAGAATGTCTTTGTCGTCCCCATTGACGCTCAACAACATTTTGGAAGTTCTTAA | 1452 | 52.41 | MEDDLLCPQDSDLDLSFTSSTSIATTSARSSLARSSLCLSFNDSTRISSAASSTAVPNLHPRPHRKSDANWSAIRAATNLSSDGTLHLRHLKLVRHVGSGNLGRVFLCRLRDYDHASFALKVVDNNSLTSKKLSHVQTEARILSSLDHPFLPTLYAHLEVSHYTCFLIDFCPNGDLHSLIRKQPNYRLPIDSVRFFAAEVLVALEYLHSLGIVYRDLKPENILIREDGHIMLSDFDLCFNADVVPKLDNRIEGRTGTKQYRSYCCYYGGDRRRRTEEKTITEFVAEPTTAFSRSCVGTHEYLAPELITGNGHGSGVDWWAFGVLIYELLYGRTPFRGGCKESTLRNIASSSEVRFDEVSTRGMAQAKDLIEKLLVKDPRGRLGCARGATDIKRHPFFDGIKWPLIRMYRPPEVRGMAVKRNSRAHVSNVSGWSSSHKKRRWLWKGLSCIFLKNKGSKRMGKPSEMVQNVFVVPIDAQQHFGSS | 483 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arla1g00419 | 483 | Gene3D | Transferase(Phosphotransferase) domain 1 | 175 | 260 | - | - | |
| Arla1g00419 | 483 | Gene3D | Phosphorylase Kinase; domain 1 | 90 | 174 | - | - | |
| Arla1g00419 | 483 | SUPERFAMILY | Protein kinase-like (PK-like) | 75 | 423 | IPR011009 | - | |
| Arla1g00419 | 483 | ProSitePatterns | Serine-Threonine protein kinases active-site signature. | 212 | 224 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Arla1g00419 | 483 | Gene3D | Transferase(Phosphotransferase) domain 1 | 293 | 411 | - | - | |
| Arla1g00419 | 483 | PANTHER | FLIPPASE KINASE 1-RELATED | 35 | 421 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
| Arla1g00419 | 483 | FunFam | Serine-threonine-protein kinase OXI1 | 290 | 415 | - | - | |
| Arla1g00419 | 483 | SMART | serkin-6 | 91 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Arla1g00419 | 483 | ProSiteProfiles | Protein kinase domain profile. | 91 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Arla1g00419 | 483 | FunFam | Serine-threonine-protein kinase OXI1 | 175 | 242 | - | - | |
| Arla1g00419 | 483 | Pfam | Protein kinase domain | 292 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Arla1g00419 | 483 | Pfam | Protein kinase domain | 93 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Arla1g00419 | 483 | CDD | STKc-phototropin-like | 89 | 413 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arla1g00419 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Arla | Arla-Chr1:10527873 | Arla5g01443 | Arla-Chr5:57036430 | dispersed | |
| Arla | Arla-Chr1:10527873 | Arla6g01286 | Arla-Chr6:87185140 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Arla1g00183 | . | 123 | 586 | AGC Kinase gene family | AT5G47750 | 78.846 | 0.0 | 755.0 | |
| Arla1g00419 | . | 1 | 447 | AGC Kinase gene family | AT1G53700 | 61.894 | 0.0 | 539.0 | |
| Arla1g00454 | . | 984 | 1059 | AGC Kinase gene family | AT5G62310 | 43.421 | 2.38e-14 | 64.3 | |
| Arla1g02044 | ACH | 135 | 233 | AGC Kinase gene family | AT5G58140 | 44.444 | 4.14e-21 | 96.3 | |
| Arla1g02648 | . | 5 | 373 | AGC Kinase gene family | AT3G25250 | 60.422 | 2.76e-158 | 451.0 | |
| Arla1g02750 | . | 1 | 518 | AGC Kinase gene family | AT2G20470 | 79.038 | 0.0 | 846.0 | |
| Arla2g00155 | . | 1 | 1288 | AGC Kinase gene family | AT3G17850 | 64.328 | 0.0 | 1568.0 | |
| Arla2g00985 | . | 4 | 60 | AGC Kinase gene family | AT3G10540 | 72.414 | 2.47e-23 | 91.3 | |
| Arla2g00986 | . | 75 | 491 | AGC Kinase gene family | AT5G04510 | 77.938 | 0.0 | 681.0 | |
| Arla2g01052 | . | 104 | 169 | AGC Kinase gene family | AT3G44610 | 75.758 | 1.66e-30 | 110.0 | |
| Arla2g01133 | . | 111 | 555 | AGC Kinase gene family | AT1G79250 | 70.913 | 0.0 | 670.0 | |
| Arla2g01359 | . | 11 | 504 | AGC Kinase gene family | AT5G09890 | 76.923 | 0.0 | 815.0 | |
| Arla2g01719 | . | 28 | 459 | AGC Kinase gene family | AT3G08720 | 55.724 | 6.42e-179 | 508.0 | |
| Arla11g00244 | . | 66 | 765 | AGC Kinase gene family | AT2G44830 | 66.154 | 0.0 | 880.0 | |
| Arla11g00459 | . | 1 | 538 | AGC Kinase gene family | AT4G14350 | 82.189 | 0.0 | 904.0 | |
| Arla12g00466 | . | 104 | 170 | AGC Kinase gene family | AT3G44610 | 68.657 | 8.63e-28 | 103.0 | |
| Arla13g00413 | . | 86 | 765 | AGC Kinase gene family | AT2G44830 | 67.149 | 0.0 | 877.0 | |
| Arla13g00595 | . | 4 | 438 | AGC Kinase gene family | AT2G34650 | 60.684 | 0.0 | 538.0 | |
| Arla15g00042 | . | 89 | 586 | AGC Kinase gene family | AT5G47750 | 78.77 | 0.0 | 796.0 | |
| Arla15g00550 | . | 135 | 453 | AGC Kinase gene family | AT3G08720 | 33.642 | 4.73e-46 | 171.0 | |
| Arla15g00558 | . | 120 | 289 | AGC Kinase gene family | AT3G08720 | 71.839 | 2.24e-82 | 249.0 | |
| Arla15g00629 | . | 1 | 991 | AGC Kinase gene family | AT1G45160 | 52.047 | 0.0 | 962.0 | |
| Arla16g00194 | . | 1 | 466 | AGC Kinase gene family | AT3G08720 | 63.057 | 0.0 | 597.0 | |
| Arla16g00797 | . | 5 | 386 | AGC Kinase gene family | AT3G25250 | 54.962 | 2.04e-148 | 425.0 | |
| Arla16g00916 | . | 37 | 540 | AGC Kinase gene family | AT4G14350 | 78.15 | 0.0 | 840.0 | |
| Arla17g00520 | . | 18 | 962 | AGC Kinase gene family | AT3G45780 | 69.169 | 0.0 | 1350.0 | |
| Arla18g00135 | . | 49 | 910 | AGC Kinase gene family | AT5G58140 | 70.81 | 0.0 | 1277.0 | |
| Arla18g00898 | . | 92 | 578 | AGC Kinase gene family | AT3G27580 | 69.94 | 0.0 | 684.0 | |
| Arla3g02016 | . | 70 | 499 | AGC Kinase gene family | AT5G40030 | 77.273 | 0.0 | 701.0 | |
| Arla3g02078 | . | 98 | 586 | AGC Kinase gene family | AT5G47750 | 67.137 | 0.0 | 665.0 | |
| Arla3g02197 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 64.425 | 0.0 | 554.0 | |
| Arla3g02199 | . | 432 | 901 | AGC Kinase gene family | AT3G52890 | 61.345 | 0.0 | 593.0 | |
| Arla3g02315 | . | 16 | 385 | AGC Kinase gene family | AT3G20830 | 58.871 | 4.40e-155 | 441.0 | |
| Arla3g02726 | . | 71 | 421 | AGC Kinase gene family | AT3G44610 | 60.969 | 4.09e-156 | 448.0 | |
| Arla3g03400 | . | 30 | 961 | AGC Kinase gene family | AT5G62310 | 56.54 | 0.0 | 1006.0 | |
| Arla4g00216 | . | 71 | 175 | AGC Kinase gene family | AT3G44610 | 53.333 | 3.92e-29 | 108.0 | |
| Arla4g00468 | . | 1 | 1294 | AGC Kinase gene family | AT3G17850 | 64.562 | 0.0 | 1592.0 | |
| Arla4g00848 | . | 30 | 1101 | AGC Kinase gene family | AT5G62310 | 60.195 | 0.0 | 1265.0 | |
| Arla4g00938 | . | 1 | 459 | AGC Kinase gene family | AT3G08720 | 69.247 | 0.0 | 629.0 | |
| Arla4g01248 | . | 4 | 486 | AGC Kinase gene family | AT3G10540 | 77.505 | 0.0 | 791.0 | |
| Arla4g02097 | . | 119 | 491 | AGC Kinase gene family | AT5G58140 | 32.984 | 5.09e-59 | 204.0 | |
| Arla4g02298 | . | 11 | 103 | AGC Kinase gene family | AT3G08720 | 41.935 | 6.95e-18 | 76.6 | |
| Arla5g01443 | . | 92 | 586 | AGC Kinase gene family | AT5G47750 | 82.164 | 0.0 | 825.0 | |
| Arla6g00211 | . | 40 | 263 | AGC Kinase gene family | AT5G04510 | 23.013 | 4.89e-11 | 65.1 | |
| Arla6g00275 | . | 4 | 525 | AGC Kinase gene family | AT2G26700 | 57.439 | 0.0 | 567.0 | |
| Arla6g00578 | . | 4 | 518 | AGC Kinase gene family | AT4G33080 | 76.346 | 0.0 | 812.0 | |
| Arla6g01286 | . | 1 | 469 | AGC Kinase gene family | AT3G14370 | 58.656 | 0.0 | 527.0 | |
| Arla6g01288 | . | 276 | 469 | AGC Kinase gene family | AT3G14370 | 58.209 | 7.83e-72 | 225.0 | |
| Arla6g01289 | . | 1 | 216 | AGC Kinase gene family | AT1G53700 | 62.832 | 8.45e-80 | 245.0 | |
| Arla7g01715 | . | 134 | 234 | AGC Kinase gene family | AT5G58140 | 42.727 | 1.25e-19 | 91.7 | |
| Arla8g00064 | . | 416 | 444 | AGC Kinase gene family | AT5G55910 | 70.968 | 1.17e-06 | 42.7 | |
| Arla8g01337 | ACH | 124 | 233 | AGC Kinase gene family | AT5G58140 | 42.017 | 3.77e-21 | 96.3 | |
| Arla9g00276 | . | 16 | 395 | AGC Kinase gene family | AT3G20830 | 57.506 | 2.37e-151 | 432.0 | |
| Arla9g00427 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 62.128 | 0.0 | 529.0 | |
| Arla9g01438 | . | 246 | 341 | AGC Kinase gene family | AT3G08720 | 30.841 | 2.51e-09 | 54.3 | |
| Arla9g01791 | . | 1 | 934 | AGC Kinase gene family | AT3G52890 | 47.222 | 0.0 | 749.0 | |
| Arla10g00011 | . | 92 | 586 | AGC Kinase gene family | AT5G47750 | 70.238 | 0.0 | 662.0 | |
| Arla10g00019 | . | 135 | 453 | AGC Kinase gene family | AT3G08720 | 33.951 | 1.29e-46 | 173.0 | |
| Arla10g01603 | . | 1 | 934 | AGC Kinase gene family | AT3G52890 | 48.891 | 0.0 | 758.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Arla | Pkinase | 2.5e-34 | CL0016 | PK | AGC_RSK-2 |