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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arla3g03383 ATGGATCTTAAGGCTAATCACAGTGCCCCCATACTCGCTGATCCCACCCCCATTAACAAACAAAGATTAGGAATTCATGATTCATTGCTACCATGCTCCCCTGGCACAATTTTCTCTCAAGGCCTTTTTCTGACACTCCCATGGAAAAAGCCTGGAGTACTTGATGATGTTCGCTCTACTAGTTGGTTGGATGCCATGAAATCGTCGTCTCCCAGGAATCGAGCAAAAAATAATGGCATTGATTTTTCATCAAATGATGTGGATGTTGCTTACCGTGATTGGATGCTCAAGTATCCATCTGCACTTGCATCCTTTGAACAGATTGCAAATAGTGCGAAAGGGAAGAGAATAGCATTGTTTCTAGATTATGATGGAACACTATCCCCAATTGTGAATAATCCAGATCATGCCTTCATGTCTAATCCTATGCGTACAGCTGTGAGAAATGTTGCAAAATACTTTCCAACAGCAATTATTAGTGGAAGAAGCCGTGAAAAGGTACGAAAGTTTGTTGGACTGAAAGAACTCTACTATGCTGGTAGTCATGGGATGGACATCATGGGTCCTGTTCGGCCTCCAACTGATCATAATACCACTGGTACCGTAAGGTCCACTAATGAGGAGGGTAAAGATGGAAACCTGTTCCAGCCTGCTAGTGAATTTCTACCAATGATCAACGAGGTTTTTGTGGCCCTTGTTGAGATAACCAAAGACATAAAAGGAGTAAAAGTTGAGGACAACAAGTTCTGTGTCTCAGTGCACTACCGTAATGTAGATGAGAAGAGTTGGCAAACAGTAGCACAATACGTCCAAGAAACTTTGAAACAGTATCCACGGCTGCGATTGACACATGGGCGAATGGTTTTAGAGGTTCGCCCTGTGCTTAAGTGGGACAAGGGGAAGGCTGTTGAGTTCTTACTTGAATCACTTGGCTTGAAAAATTGCGATGATGTTCTTCCCATTTACGTAGGAGATGATAGAACCGATGAAGATGCATTTAAGTTTCTAAGAGACAGTGATCGTGGTTATGGTATCTTGGTGTCTTCCGAACCCAAGGAAAGCAATGCATATTATTCTCTCAGGGATCCATCAGAGGTGATGAAATTTATGAAGTCATTGGTGATGTATAAGGAGTCCATTCCATGA 1146 42.41 MDLKANHSAPILADPTPINKQRLGIHDSLLPCSPGTIFSQGLFLTLPWKKPGVLDDVRSTSWLDAMKSSSPRNRAKNNGIDFSSNDVDVAYRDWMLKYPSALASFEQIANSAKGKRIALFLDYDGTLSPIVNNPDHAFMSNPMRTAVRNVAKYFPTAIISGRSREKVRKFVGLKELYYAGSHGMDIMGPVRPPTDHNTTGTVRSTNEEGKDGNLFQPASEFLPMINEVFVALVEITKDIKGVKVEDNKFCVSVHYRNVDEKSWQTVAQYVQETLKQYPRLRLTHGRMVLEVRPVLKWDKGKAVEFLLESLGLKNCDDVLPIYVGDDRTDEDAFKFLRDSDRGYGILVSSEPKESNAYYSLRDPSEVMKFMKSLVMYKESIP 381
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arla3g03383 381 FunFam Trehalose 6-phosphate phosphatase 224 381 - -
Arla3g03383 381 Pfam Trehalose-phosphatase 120 364 IPR003337 GO:0005992(InterPro)
Arla3g03383 381 NCBIfam HAD-IIB family hydrolase 119 337 IPR006379 -
Arla3g03383 381 Gene3D - 203 294 - -
Arla3g03383 381 SUPERFAMILY HAD-like 118 375 IPR036412 -
Arla3g03383 381 FunFam Trehalose 6-phosphate phosphatase 218 294 - -
Arla3g03383 381 NCBIfam trehalose-phosphatase 114 374 IPR003337 GO:0005992(InterPro)
Arla3g03383 381 Gene3D - 119 360 IPR023214 -
Arla3g03383 381 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 51 378 IPR044651 GO:0004805(PANTHER)|GO:0004805(InterPro)|GO:0005992(InterPro)|GO:0005992(PANTHER)
Arla3g03383 381 CDD HAD-TPP 118 368 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arla3g03383 K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12]
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Event-related genes

Select Gene_1 Gene_2 Event_name
17196 Arla3g03383 Arla4g00868
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Arla Arla-Chr15:67245024 Arla3g03383 Arla-Chr3:135318577 dispersed
Arla Arla-Chr2:5568484 Arla3g03383 Arla-Chr3:135318577 dispersed
Arla Arla-Chr3:135318577 Arla9g01083 Arla-Chr9:26521142 dispersed
Arla Arla-Chr11:74879287 Arla3g03383 Arla-Chr3:135318577 wgd
Arla Arla-Chr3:135318577 Arla4g00868 Arla-Chr4:67398638 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Arla1g01979 ACH 266 835 Trehalose Biosynthesis gene family AT2G18700 72.552 0.0 844.0
Arla11g01280 . 578 826 Trehalose Biosynthesis gene family AT1G23870 25.714 2.23e-10 60.8
Arla12g00690 . 200 293 Trehalose Biosynthesis gene family AT1G68020 55.319 7.19e-28 102.0
Arla12g00691 . 56 184 Trehalose Biosynthesis gene family AT1G68020 64.615 6.90e-48 163.0
Arla13g00672 . 6 936 Trehalose Biosynthesis gene family AT1G78580 70.14 0.0 1316.0
Arla13g00702 ACH 2 834 Trehalose Biosynthesis gene family AT1G06410 55.767 0.0 1002.0
Arla14g00284 . 583 788 Trehalose Biosynthesis gene family AT1G70290 29.224 6.45e-11 62.0
Arla15g01047 . 583 788 Trehalose Biosynthesis gene family AT1G70290 28.507 3.85e-09 55.8
Arla17g00132 . 625 743 Trehalose Biosynthesis gene family AT1G06410 64.706 5.78e-53 176.0
Arla3g01783 . 92 146 Trehalose Biosynthesis gene family AT1G78580 87.273 1.19e-26 100.0
Arla3g01784 . 165 205 Trehalose Biosynthesis gene family AT4G27550 75.61 1.37e-16 70.9
Arla3g03383 ACH 583 834 Trehalose Biosynthesis gene family AT1G70290 24.82 1.04e-09 58.5
Arla3g03544 ACH 583 835 Trehalose Biosynthesis gene family AT1G70290 27.208 1.13e-08 55.1
Arla4g00413 . 1 848 Trehalose Biosynthesis gene family AT1G06410 78.947 0.0 1400.0
Arla4g00720 ACH 537 830 Trehalose Biosynthesis gene family AT1G60140 26.284 2.89e-10 59.7
Arla4g00868 ACH 573 836 Trehalose Biosynthesis gene family AT1G70290 26.298 7.75e-11 62.0
Arla4g02164 ACH 1 860 Trehalose Biosynthesis gene family AT1G60140 72.442 0.0 1320.0
Arla5g00167 ACH 1 860 Trehalose Biosynthesis gene family AT1G60140 70.151 0.0 1286.0
Arla5g00519 ACH 1 843 Trehalose Biosynthesis gene family AT4G17770 73.709 0.0 1311.0
Arla5g01110 ACH 1 841 Trehalose Biosynthesis gene family AT1G06410 70.13 0.0 1273.0
Arla7g00308 . 69 623 Trehalose Biosynthesis gene family AT4G24040 56.373 0.0 631.0
Arla7g00439 . 1 843 Trehalose Biosynthesis gene family AT4G17770 78.04 0.0 1415.0
Arla7g01726 ACH 1 843 Trehalose Biosynthesis gene family AT4G17770 69.321 0.0 1232.0
Arla8g01402 ACH 7 835 Trehalose Biosynthesis gene family AT2G18700 65.957 0.0 1166.0
Arla9g01083 . 573 834 Trehalose Biosynthesis gene family AT1G70290 27.778 1.61e-10 60.8
Arla10g00293 . 2 843 Trehalose Biosynthesis gene family AT1G06410 67.453 0.0 1212.0