AGRP Logo

AGRP

Asteraceae Genomic Research Platform

AGRP Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arla4g01953 ATGGCTGCCTATCTCCTCCTCCCTCCTTCGCCTATCTCCTCCTCCCTCCTCTGCCTATCGCCGCCTATCTCCTCCTCCCTCCTCTGCCTTCTCCCTCGTCGCTCTCCTCCCCCTATGCGAGTAGGGTTTTATCGCTGCTTATCTCCCTTGCCACTCCTCCGCCTATCGCCGCCCCTCCGCCTATCTCCTCCTCCCTCCTCCGCCTTCTCCCTCGTTGCTCTCAGCGCCTCTTCACGATGGCGTAGCAGCTCAAGATTCGACCCCGATAAGTGTGGGCTCCAGAACTTCATTGGGCCTGGTTTTCCAGGGTTGAAGAAGCGAGGGCATACTCTTGGAAACCGATCTTGGATAAAAATTGAGCAAAGTGGGAACTCGAAAGTTGTGGAGCTAGACAAGGCAACTGTAATGAGGCATTGTTCTTTGCCGGCTAGAGATCTTCGTCTTTTGGATCCTCTTTTTATTTATCCATCCACGATATTAGGCCGTGAGAAAGCTATTGTGGTTAGTCTTGAGCAGATTAGATGTATAATCACAGCGGATGAGGTATTCCTTATGAATTCACTGGACGGATCTGTAGTTCAGTACAAATCCGAATTGTGCAAACGCCTTCAGAAAGAGAAATATAACTCAGATGATCTACCATTTGAGTTTAGGGCGTTGGAACTTGCATTGGAGTTTACGTGCCTCACTCTTGATACTCAGGTGAAAGAGTTGGAAATGGAAATTCATCCAGTACTTGATGAACTAGCAAAATCAATAAGTACTCTCAATCTTGAACGTGTTCGAAGATTCAAAGGCCACCTTCTGGCATTGACTCAACGGGTGCAAAAGGTCTGTGATGAAATAGAACATCTAATGAATGATGATGGAGATATGGCTGAGATGTACCTAACTGAGAAGAAACAAAGGAACTTGTGTAATGATCTATATGATCAAGTACAAGGTAATATTTTTATCGGGCCTGGAGTGGGATTAGGATCAAAATCCGCTCCTGTTTCCCCTGTCGGGTCTGCGAGTGGGTCACATAAATTGCAAAGGGCATTTAGTAATATAAGTGCACACAGACATGGAAGCTTGTTGAGTTCATCTGCAACTGCTGAAACTGAAAACATTGATCAACTTGAGATGTTGCTGGAAGCATATTTCGTTGGAATTGACAACACTCTAAATAAGCTGCTTTCGCTCAAGGAATACATCGATGACACCGAAGATCTGATCAACATTAAACTTGGAAATATTCAGAATCAGCTGATTAAGTTCGAGCTGCTTTTGACAGCCGCTACCTTTTTGGCTACGGTTTTTGCTGTCGTCACAGCGGTATTCGGAATGAACTTTGAAGATGACGTTTTCGATGAGCCAAACAGATTCCAGTGGGTCGTTTCTGTCAGCGTGACTTTATGTGGAGTCTTGTATATATGTTTCTTGCTTTATTTTAAATATAAGAAAATTTTCCCTCTGTAG 1461 44.7 MAAYLLLPPSPISSSLLCLSPPISSSLLCLLPRRSPPPMRVGFYRCLSPLPLLRLSPPLRLSPPPSSAFSLVALSASSRWRSSSRFDPDKCGLQNFIGPGFPGLKKRGHTLGNRSWIKIEQSGNSKVVELDKATVMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLEQIRCIITADEVFLMNSLDGSVVQYKSELCKRLQKEKYNSDDLPFEFRALELALEFTCLTLDTQVKELEMEIHPVLDELAKSISTLNLERVRRFKGHLLALTQRVQKVCDEIEHLMNDDGDMAEMYLTEKKQRNLCNDLYDQVQGNIFIGPGVGLGSKSAPVSPVGSASGSHKLQRAFSNISAHRHGSLLSSSATAETENIDQLEMLLEAYFVGIDNTLNKLLSLKEYIDDTEDLINIKLGNIQNQLIKFELLLTAATFLATVFAVVTAVFGMNFEDDVFDEPNRFQWVVSVSVTLCGVLYICFLLYFKYKKIFPL 486
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arla4g01953 486 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 101 483 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Arla4g01953 486 Pfam Magnesium transporter MRS2-like 123 304 - -
Arla4g01953 486 Gene3D Magnesium transport protein CorA, transmembrane region 424 482 - -
Arla4g01953 486 FunFam Magnesium transporter MRS2-1 103 187 - -
Arla4g01953 486 Gene3D - 106 187 - -
Arla4g01953 486 Gene3D Magnesium transport protein CorA, transmembrane region 190 417 - -
Arla4g01953 486 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 423 475 IPR045863 -
Arla4g01953 486 CDD Mrs2-Mfm1p-like 116 483 IPR039204 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arla4g01953 K16075 magnesium transporter
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Arla Arla-Chr15:4268112 Arla4g01953 Arla-Chr4:105315612 dispersed
Arla Arla-Chr2:146464633 Arla4g01953 Arla-Chr4:105315612 dispersed
Arla Arla-Chr4:105315612 Arla9g01781 Arla-Chr9:81039675 dispersed
Arla Arla-Chr4:105315612 Arla12g00222 Arla-Chr12:3970676 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Arla1g00089 . 132 238 MRS2 gene family AT5G22830 74.766 2.80e-49 171.0
Arla1g01032 . 1 436 MRS2 gene family AT3G58970 65.591 0.0 564.0
Arla2g02025 ACH 1 442 MRS2 gene family AT1G16010 78.076 0.0 672.0
Arla12g00222 ACH 1 442 MRS2 gene family AT1G16010 84.564 0.0 741.0
Arla15g00208 ACH 1 352 MRS2 gene family AT1G80900 76.901 0.0 538.0
Arla3g02223 ACH 1 459 MRS2 gene family AT5G22830 65.171 0.0 532.0
Arla4g01953 . 35 421 MRS2 gene family AT2G03620 68.262 1.08e-177 503.0
Arla6g01049 ACH 47 484 MRS2 gene family AT3G19640 67.77 0.0 571.0
Arla8g00694 ACH 47 484 MRS2 gene family AT3G19640 63.913 0.0 551.0
Arla9g00396 ACH 123 459 MRS2 gene family AT5G22830 76.627 1.14e-174 496.0
Arla9g01781 . 6 386 MRS2 gene family AT5G09690 73.228 0.0 549.0