AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arla4g01957 ATGGAAGAAGAACTCGACAAGGTGAAGTCTCGAATTATAGTCGAGGAATGGAGTGGTTCTTCTTTGAACAAACTCTCGCTGACCGCTGTCATATCGCCGTCTTCTTCTTCTTCTTCGTCTTTCACCTTGAAAAGACACGGTAATCGATTCAACATTTTCTCCCGAAGGTTTCTCGAAGCGTTTGTTCCTGAGGGGTTTCCGAGCAGTGTGACTCCAGATTACATTCCTTTTCAGACATGGGATTTATTGCAGGGCCTCTCAACATACATAAGGACCATGCTTTCTACACAAGCTCTTTTGAGTGCTATTGGAGTCGGAGAGAAATCAGCAACTGTAATTGGGGCTACTTTTCAGTGGTTTTTGAGGGATTTAACTGGAATGCTTGGAGGTGTCATGTTCACATTCTACCAGGGCTCAAACCTAGACAGTGATGCCAAAATGTGGCGTTTGGTTGCAGACCTAATGAATGATCTTGGAATGCTGATGGACCTTCTTTCTCCATTGTTCCCTTCGGCATTTCTATTCATTGTCTGCATAGGGAGCTTGTCAAGATCTTTCACTGGTGTTGCCAGTGGAGCAACTAGAGCTGCTTTGACACAGCATTTTGCTCTTCAGAACAATGCAGCAGATATATCTGCAAAGGAAGGAAGCCAGGAGACAGTTGCAACAATGATGGGAATGGCTTTAGGGATGCTTCTTGCGCACATTACAATGGGACACTCAACGATCATATGGTTCTCTTTTCTGTCGCTCACCATGTTCCACATGTATGCTAATTACAAGGCTGTTAGGTGTCTTAATCTGACTACCTTAAACTGTGAAAGAAGCTCAATTCTTTTGCTGCATTTCATGGAGACTGGCCGAGTTCTCTCTCCGAAAGAGGTCTCAGTCTTGGAGCATGTCTTACCGTTATGGATAAGTTCTTGGAGCTCAAAGCATACAAAACTTTTGTATGCACGGGTACGCTTAGGTGCGAGGATTTCCTCACTTGACAGCCTGGAAATGATGGAGCTATTAAGTTCTGCTGGATCTCGATATGAGAAAGCAAAATACATGCTACTTGAGAAGAAGGGAATCATCAGCATTATTATGCATAGAGATTCAACTACTGGAGATGTCATGCAGGGGTTCATGCATGCTCTTGTTATGGCAAATCTTCTAGATGATAAGCGTACGTCATTACATATGGATAGCCAAACATGGATGGACAAACACTATGAAGCCTTTGTTTTGAAGCTTCAGTCATCTGGTTGGAAAACGGAGCGCCTTTTGTCTCCATCAATTGTCTGGAGGGCAAACTGGAGCCGTGAGGCTCCAGATAAGAAAAGAAACTAG 1335 43.75 MEEELDKVKSRIIVEEWSGSSLNKLSLTAVISPSSSSSSSFTLKRHGNRFNIFSRRFLEAFVPEGFPSSVTPDYIPFQTWDLLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVMFTFYQGSNLDSDAKMWRLVADLMNDLGMLMDLLSPLFPSAFLFIVCIGSLSRSFTGVASGATRAALTQHFALQNNAADISAKEGSQETVATMMGMALGMLLAHITMGHSTIIWFSFLSLTMFHMYANYKAVRCLNLTTLNCERSSILLLHFMETGRVLSPKEVSVLEHVLPLWISSWSSKHTKLLYARVRLGARISSLDSLEMMELLSSAGSRYEKAKYMLLEKKGIISIIMHRDSTTGDVMQGFMHALVMANLLDDKRTSLHMDSQTWMDKHYEAFVLKLQSSGWKTERLLSPSIVWRANWSREAPDKKRN 444
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arla4g01957 444 Pfam Vitamin B6 photo-protection and homoeostasis 54 286 IPR054549 -
Arla4g01957 444 PANTHER RUS1 FAMILY PROTEIN C16ORF58 7 433 IPR006968 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arla4g01957 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
323953 Arla Arla11g00745 Arla-Chr11:55424283 Arla4g01957 Arla-Chr4:105339599
337010 Arla Arla4g01957 Arla-Chr4:105339599 Arla8g01037 Arla-Chr8:56500806
349686 Arla Arla4g01957 Arla-Chr4:105339599 Arla1g02764 Arla-Chr1:176610846