AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arla5g01030 ATGGCTGCGTCGTGGCATCTCTATACTGTAATTCGTAAAGAAGTATGTTTGCAAAATGCAAGGGAAGGCTGCACAGAAAAATCTCTCCCCAACCCTCGCATGGATGACTTCGAATGGGCCTTGGTGCACGAGAGCCCTTGTTATTTGTATCCTATAATTTTTCTTTGGAATGATAGGGTGTATAAAAGCGGATACGATATCCCTCCCTTTTGTGCTTTATGCTCATTGAACCTGTATATTGAACATGGAACAGAAGAAAGCATATTGCTAGTTGAGACCTGCTTGGACCACTTCAAGATTTATGAAGAAGACTTGAAGAGTACACATCTAGAACCAGTCGTTGCTTCACTCTTTAGAAAGTTGCTGGAAAAGCCACATTTCAGTAGGGTATTCTCTGGTTTCCTGAGACGTACAACAATCAGTGAAGAATTTCTGGACAATCTATCCAGCGCACTGCAATTATCAGCATATGAGAAACTTGGTTTTGGTCTTGCTTTATTAGATTCAGAAAAAAATGATGTCAGAACAGCAGGCGAGTTTTTTTTTTCTTCTTTTTACTGCTGTTATTCATGGCTTGACTTGTACATGCATATGAGAATTATGTTGCTGCTTTCAGGAAGGAACTTCTGTATGGCACAGTTTGAAGAGTTGCATGCTACTCATGCCTCTTTGGATACTGCTGATTGCGTTCACAAAGGTCTAAGGTTTCTTGAGCAATCAGAAATCTTTTCCAAACATGTTGATTCATTTATGCAAATGATATTGCAAATTTGGTTAAATGAGAATTCAGGTTTTATATTAGCTCCTCAGCATTCAGACCAACTGCATGATTCCAAGCTTAGGATGCTAGTCTTCCCTTCATCTACGGCAATTAATTACTCGATTCCAATTGCTGCTGTTTGTGGCAATGTATGGGAAAACAATGAAGGGCAGTTTCCATTTCTGAAGAATGCAGTCAGGGTGTCACCAGAAGCATCAATTTTTGCACATTCCAGAAGACAACTGGAATATGCAGATGCAGAGAATAATCATAAGTTTCATGCTGATCATGCAAGCCATCCATGGCTATCCATTGATCATTTAGAACATCTGTGTCTACTAGCGGAGAGTGGCCATGAAACTTCGGTTCGGTCAATGCTTGAGATCACTTTGAAGCATTGCCCCGAAGAGCTGCTGATCGGGATAGCCCATATTATTACTCCATTTAATCTCCTCCAATGTGAAGTTTCTTCAATTGTACTGCCTATGCTACTTAAAGATGATTCCAAGAGAGAAATCGTTCTGAATCTGTGGCATGTCAACCCTGTGTTCTTTTCGAGGGCATTAACGGATGCCCTCAACTCTGATCCAAGAAACACAAATAGAGTTGTCAATTTGTTAGAGGACTTACAGATCCTATCATCTGTACTGGATTTGGTACCCATGTCTCTGGGAATTAGACTGGCTGCTCTTGCTTCTCTAAATGAATTTATAGATTTGGAGGAGTGGTTGAGCACTAATTTAAGTACATATGAAGACATTTTCTTTGAGGAGTGCCTTCGATTCCTAAAGGTGGTCGAAGTTGATGCTCAGGACTCTTCTGACTGTGGTGAAATTTTGAGTGTCTATAAGGAGACAGCCCCTACATTTTTAAAGGTCCTTCAATTGCACACTAGCTTGCTAGTCTCTAATCAACTTTCCGAGGAAGTGAAAAGGTTGTATGTAACGTGTATGCACAACGGTCAAAGGATGAAGAACGTTGGTGGCCCTAATTCTTCAACATCTGAAATATATGAAGATGATATAGAGAAAGAGGTCAATTTTTATTTCCAGCAGATGTTCTCTGGTCAGTTGACAGTTGATGCAATGGTTCAAACGCTTACGCAGTTCAAGGGATCTTCTGAAAAAAGGGAGCAATCTGTATTTGAGTGCATGATCAACAACCTGTTTGAAGTGTACAAGTTTATCAACAAATACCCTGATGAAGAACTTAAGATTGTTGCTGTCCTATTTGGATTGCTTATTAGGCATCGCCTTTTGAGCCATCCCATACTTGGCATTTCCTTACAAGCTGTTTTGGATGCATTACATGAACCTGCAGATTCCAAAATGTTTGTTTTTGCGACGAAGGCGCTGGAAAGTTTTGTGGATTGCTTGATTGAGTGGCCAGATTACAGCCAGAAGATCTTACAGATCTCACATCTACATCTTACTCATCCCGGGCTTGTTTTGGTAATTGAGCAGACGCTTGCTGGTACTTCCTCAAGCCATCCAGAATCAGCTGAAGGCCACAATTCTGGCACCAACCAACACCATAGTTCTAGCCCACCAGCAAATGTTGAGATGACGGCTTCATCCTTACCTTTGACTGGAGATGATGGTGGACAGATTGATTCTCAAGTATGTTCTCCAATCCAGCTACACCAGAGGAGCGAGAGTCATTTGGATGAGAGACAGAAAGCCTCTTCGACATCGTCCAGTGATACAAATCCAAACTTATCTACTTCAGGACAAGTCTCAGTTACCTCAAGTGGTTCAAATTTGTTGCCAATAACCTTTTTACATCATCATGTTCCAATGCAGCCTCAGAGTGTAGTCAAGTCTTCGGCAGCAACGTCTTCCTCTCCTGGTTTCAGTTCTCCATCTCGAGCAGTCACCTCAGCTAGGTTTGGCTCTGCATCAAGCATTGGAACACTACTTGCTGCTGCTGAAAGAAGAGAAACGCCCATAGAGGCCCCACCGTCAGAAACTCAGGATAGGATCTCCTTTATTATTAATACTTTATCTGCTGCCAATATTGAAGCTAAAGCAAAAGAATTTACAGAGATTATTGAAGAACAGTACTATCCCTGGTTTGGACACTATATAGTTATGAACAGAGTGAGCATCGAACCAAACTTTCACATGTTGTACTTGAATCTCCTAGAGAAAGCTAATTCGACACGTTTGAACGAAGAGGTAGTTCGGGCAACTTATGAGAATTGCAAGGTAGTTCTTTTAAGATCTGAGCTCATAAAGTCCAGTGTGGAAGAGCGTTCATTGCTGAAGAATCTTGGAGGCTGGCTTGGGAGGATTACAATTGGTAGAAACCGAGTTCTACGCTCTAGAGACATTGATCCAAAATCTTTACTTCTGGAGGCTTATGAAGAGGGTTTAATGATTGGGGTGATTCCATTTATCTCCAAGATTTTGGAACCATGTCAAAGCAGTCTAGCATATCAACCACCAAATCCTTGGACTATGGGAATTCTTGGATTACTTGCTGAAATTCATGCAATGCCAAACCTCAAAGTGAATCTCAAGTTTGAAATTGAAGTCTTATTCAAAAATCTTGATATGGATTTGAAGGCAATAACTCCAACATCTCTTCTTAAGGGCAGGGTGAGGAAATTTGAAGGAAACCCTGATTTTTCTAACAAAGATGTTGGGTCTTCTCAACAACATGTTGTTGAAGAAGTTAACTCTACCATGAGATCTGACAAAAATCAAGTTGAATTGCCACCTGAAGCTTCTGGTCCATCTTATCAGGGTGGCCACTCACATGTATTATACCAGCATGCTGCTCCACTCCATCTTCCTGCTCTGTCGTTGGGTGAGGATGAGAAGACGGCAACTTTAGGCTTATGCAATCAGCTTCCACCTGCTCAAGGACATCAAGTAGCACAATTGCCATTACCAGTTACCCAGGTATGGTCATTGCATTTGCAGCTACCTGCACCAACTTTAAACATACCACAGCAGGTTAATGTCAACCCTGAGCTCCAACCTTCTCATCTCGATATGCATTTCCAGAGGGTGCTACCACTGGCAATGGATAATGCCATTAAAGAAATAGTTTCTAGTATTGTCCAGAAAAGTGCTTCTATAGCATCTCATACAACGGTGGAACTTATCTTAAAGGAGTATGATACTGAGTTGGATGAGAACTGCATACGCGAAGCATCATGCATGATGGTTGTGCATCTGGCTGGAAATCTAGCTTATGTGACCTGCAAGGAACCTTTGCGTAGATCGATATCAACTCAGCTAAGAAACTTGCTACAGGGTTCTAATGTTGCAAGTCAATTCCTTGAACAAGCCATTCAACGTGTTACTCATGATAACCTTGATTTGGGCTGTGCATCAATTGAAAAGGCTGCAACGGACAAGGGGATAACAATGGTACAAAGGGAACTTGCTCAACAACTTTCACTTAGAAGGAAGCATAGAGAAGGTGATAGACCTGCAACTTTCTTTCCAAACCTACCTGCACAAGGTAATGTAGGCGCTCTTCCAGAAGCCTTTTATCCTCAATCTGGCCATTTATCCCATCCTCAACAGCAAGTTTACGAGGATTTTGTTCCGCTACCTGGGCAAAATTTCAGTCAACACTCAAATACTTTGCTTGCCGTTCCTTTAGTTCCATGTTTTCGTGTTTCTCTACCCCAGGGATATGCCTTGGGATCAGGGCAACTGAACCCTGGCATTTTCTCATCTCACCTTGGAAACTCCGGAATTAATGCTACTGCACTCTCATTGGATCCTGTAGATACAGAGCGTGGTTCACTGAGATTTTCAAGTGCTTCCTCAATTCATACCATGATGGCTAGTAATAGTCATCCATGCAATAATGAGAATGAGGATGTTCTTCCTTCATTTCCTTCTGTTCCAGCTCCTCAATCGCATGTATTAGAGCCTTCTAATGTTGCAAAAGAATTGGGAATCCATGAACAGCCTTTACTTCCACCTTCAGGTTCTGAGCGCTTGACAAGCAACACTGTAGAACCTTCGTTAGCTACTGATACTGCTTTGGATATATACCAGTTTCTTTCAAAGAAGCTTGAACTTTTGATTGCTAATGATGCTAAAGAAGCTGAAATTCAGTCAGTTATTGCTGAGGTTCCAACGGTCATTCTTAGATGCATAAGCAAGGATGAGGCTGCCTTGGCTGTTGCCCAGAAGGTTTTTGAATGCTTATACCAAAATGCAAACAACGCTGCTTACGTGGATGCTCATCTTGCCATATTAGCTGCCATTTGTGATGTTAGCGAGCTTGTGAGGAAGGAGCTGACTAGTTGGGTACTTCATTCTGATGATGATAGGAAGTTCAACAAATATATCACTGTTGGCTTAATTCACAGAGAATTACTAAACCTTGCTGAGTATAATGTTCACATGGCCAAGCTTATTGATGCGGGAAAGAAAGGGATGGCAGCAGAATTTTGTATTTCTCTTATTCAAACACTGCAGGCAAGTGATGCCAGAGTAATATCTGAACTCCATAATGTCGTTGATGCATTGGCCAAGGTTAATACTCCTGTTCTTCTTGATATCAATTTTGATGCTAACTTTTTTGTTTCAACGGAACAGGTCACTGCTCCTGTAGCCAATAGGGATGATAACCTTGCATCGGAATCTTCTAAACTCGATCCTCCTGATTTCCTTGGGCAGGTAGTTTCTATGGTACTTACTGAATGGTGCCAGATATGGGATCGCCCTGGTGTTGATGATGCAGTTCGTGCTCATTATGTTCTACAACTTAATAGAAATGTGTTGTCGAAAGCTGATGATATGCCAAACCGCTTTTTCCGCCTTCTCTTGGAGCTTGCTGTATCGCACTATCTAGCTTCCGAGGGGATCAACTCTAGCCAATCGCAATTGCATCAACAAGCAGATCCTTTCCTTGTTATTGATTTATATGCAGACCTTGTTTTTTCAATCTTAAAGTTTTGCGCTGTTGACCAGGGACCAAACAAGCTCTCTCTTTTGTCAAAGGTGTTAGCGGTGATTGTGAAATTCATTAAAAAAGATGTGGAGGAAAAGAAAACATCATTCTGTCCTAACCCATATCTCAGGCTATTCATGAACTTCTTGTTTCACCTTGGTACCCTAAACGCGATCATTGATGATGCAAATTTTCAGGTTCTGACAGCTCTATCAAGTTATTATCATGCCCTGCAGCCCATGAGAGTTCCTGCATTCAGCTTTGCATGGCTTGAGCTAGTTAGTCACAAAGATTTCATGCCAAAAATCCTCACCGCAAATGGTCAAAAAGGGTGGCCATATTTCGAGCGCTTGCTGATAGATTTGTTGCAGTTCATGGAGCCTTTTTTGAGGACTGGTGAACTTGCAGAGCCGGTTCGTGTTCTCTACATAGGCACACTCAGGGTGCTGTTGGTATTGCTCCATGATTTTCCGGAGTTCCTTTGTTATTATTACTTCAGCTTCTGTGACGTCATTGCCCCACGCTGCATCCAGTTGCGAAATATAATTATCAGTGCATTCCCCAAGAACATGAGGATACCAGACCCTAACACCCTCAACCTGAAGGTCGATCTGCTAGTTGAGATGAGTCAACCACCCTGCATTCTCTCCGAGTTTGATGCCGTTTTGAAAGCCAACAAATTGAAAAGTGTCGTGGATGAGTATATAATGATGAGGCCAGAAGGATCTTCATTTCTTTCGGAATTGAAGTATAAACTGCGTCTTTCATCAAGTGAAGCCGAAAGGTGTGGAACTTCCTACAACGTGCCTTTGATGAATTCACTTGTACTTTACGTTGGAACACAGGCCATCCAGAAGATCCAGGCAAGTACAGCTTCTCATCCAACATGCATGGCTAGGTATATTCCATTGTCCGCTTTCCTCGCGGGTGCGGCTTTCGACATCTTCCAAACATTGATACTAGAGCTAGATTCCGAAGGCCGTTACATCTTCTTCAATGCAGTTGCAAACCAACTGCGCTATCCGAACAACCACACACATTACTTTTCCTTCGTCATGCTTTACTTCTTTGGGAAGTTAAACCAGGAGTCAATCCAGGAACTGATCATCAGAGTTCTATTGGAGCGATTGATCACCAAGCGTCCACACCCATGGGGTGCCCTCGTCACTTTCCTTGAGCTTGTGAAGAATCCGAAGTACAACTTTTGGAACCTATCTTTTACAAGGTGTGCACCTGAGATAGAAAAGGTGTTCGATTCAGTTTCAGAATCTTGTGGTTTAACAAAACCGGAAGACGCTTCTGGGAGTGGTGCCTGA 6999 42.09 MAASWHLYTVIRKEVCLQNAREGCTEKSLPNPRMDDFEWALVHESPCYLYPIIFLWNDRVYKSGYDIPPFCALCSLNLYIEHGTEESILLVETCLDHFKIYEEDLKSTHLEPVVASLFRKLLEKPHFSRVFSGFLRRTTISEEFLDNLSSALQLSAYEKLGFGLALLDSEKNDVRTAGEFFFSSFYCCYSWLDLYMHMRIMLLLSGRNFCMAQFEELHATHASLDTADCVHKGLRFLEQSEIFSKHVDSFMQMILQIWLNENSGFILAPQHSDQLHDSKLRMLVFPSSTAINYSIPIAAVCGNVWENNEGQFPFLKNAVRVSPEASIFAHSRRQLEYADAENNHKFHADHASHPWLSIDHLEHLCLLAESGHETSVRSMLEITLKHCPEELLIGIAHIITPFNLLQCEVSSIVLPMLLKDDSKREIVLNLWHVNPVFFSRALTDALNSDPRNTNRVVNLLEDLQILSSVLDLVPMSLGIRLAALASLNEFIDLEEWLSTNLSTYEDIFFEECLRFLKVVEVDAQDSSDCGEILSVYKETAPTFLKVLQLHTSLLVSNQLSEEVKRLYVTCMHNGQRMKNVGGPNSSTSEIYEDDIEKEVNFYFQQMFSGQLTVDAMVQTLTQFKGSSEKREQSVFECMINNLFEVYKFINKYPDEELKIVAVLFGLLIRHRLLSHPILGISLQAVLDALHEPADSKMFVFATKALESFVDCLIEWPDYSQKILQISHLHLTHPGLVLVIEQTLAGTSSSHPESAEGHNSGTNQHHSSSPPANVEMTASSLPLTGDDGGQIDSQVCSPIQLHQRSESHLDERQKASSTSSSDTNPNLSTSGQVSVTSSGSNLLPITFLHHHVPMQPQSVVKSSAATSSSPGFSSPSRAVTSARFGSASSIGTLLAAAERRETPIEAPPSETQDRISFIINTLSAANIEAKAKEFTEIIEEQYYPWFGHYIVMNRVSIEPNFHMLYLNLLEKANSTRLNEEVVRATYENCKVVLLRSELIKSSVEERSLLKNLGGWLGRITIGRNRVLRSRDIDPKSLLLEAYEEGLMIGVIPFISKILEPCQSSLAYQPPNPWTMGILGLLAEIHAMPNLKVNLKFEIEVLFKNLDMDLKAITPTSLLKGRVRKFEGNPDFSNKDVGSSQQHVVEEVNSTMRSDKNQVELPPEASGPSYQGGHSHVLYQHAAPLHLPALSLGEDEKTATLGLCNQLPPAQGHQVAQLPLPVTQVWSLHLQLPAPTLNIPQQVNVNPELQPSHLDMHFQRVLPLAMDNAIKEIVSSIVQKSASIASHTTVELILKEYDTELDENCIREASCMMVVHLAGNLAYVTCKEPLRRSISTQLRNLLQGSNVASQFLEQAIQRVTHDNLDLGCASIEKAATDKGITMVQRELAQQLSLRRKHREGDRPATFFPNLPAQGNVGALPEAFYPQSGHLSHPQQQVYEDFVPLPGQNFSQHSNTLLAVPLVPCFRVSLPQGYALGSGQLNPGIFSSHLGNSGINATALSLDPVDTERGSLRFSSASSIHTMMASNSHPCNNENEDVLPSFPSVPAPQSHVLEPSNVAKELGIHEQPLLPPSGSERLTSNTVEPSLATDTALDIYQFLSKKLELLIANDAKEAEIQSVIAEVPTVILRCISKDEAALAVAQKVFECLYQNANNAAYVDAHLAILAAICDVSELVRKELTSWVLHSDDDRKFNKYITVGLIHRELLNLAEYNVHMAKLIDAGKKGMAAEFCISLIQTLQASDARVISELHNVVDALAKVNTPVLLDINFDANFFVSTEQVTAPVANRDDNLASESSKLDPPDFLGQVVSMVLTEWCQIWDRPGVDDAVRAHYVLQLNRNVLSKADDMPNRFFRLLLELAVSHYLASEGINSSQSQLHQQADPFLVIDLYADLVFSILKFCAVDQGPNKLSLLSKVLAVIVKFIKKDVEEKKTSFCPNPYLRLFMNFLFHLGTLNAIIDDANFQVLTALSSYYHALQPMRVPAFSFAWLELVSHKDFMPKILTANGQKGWPYFERLLIDLLQFMEPFLRTGELAEPVRVLYIGTLRVLLVLLHDFPEFLCYYYFSFCDVIAPRCIQLRNIIISAFPKNMRIPDPNTLNLKVDLLVEMSQPPCILSEFDAVLKANKLKSVVDEYIMMRPEGSSFLSELKYKLRLSSSEAERCGTSYNVPLMNSLVLYVGTQAIQKIQASTASHPTCMARYIPLSAFLAGAAFDIFQTLILELDSEGRYIFFNAVANQLRYPNNHTHYFSFVMLYFFGKLNQESIQELIIRVLLERLITKRPHPWGALVTFLELVKNPKYNFWNLSFTRCAPEIEKVFDSVSESCGLTKPEDASGSGA 2332
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arla5g01030 2332 Pfam CCR4-Not complex component, Not1 1953 2315 IPR007196 -
Arla5g01030 2332 Gene3D - 2088 2320 - -
Arla5g01030 2332 FunFam Ccr4-Not transcription complex subunit 876 1125 - -
Arla5g01030 2332 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 903 1123 IPR032191 -
Arla5g01030 2332 MobiDBLite consensus disorder prediction 1149 1170 - -
Arla5g01030 2332 MobiDBLite consensus disorder prediction 815 834 - -
Arla5g01030 2332 Gene3D - 1790 2087 - -
Arla5g01030 2332 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 79 281 IPR040398 GO:0000288(PANTHER)|GO:0000932(PANTHER)|GO:0017148(InterPro)|GO:0030015(InterPro)|GO:0030015(PANTHER)|GO:0060090(PANTHER)
Arla5g01030 2332 MobiDBLite consensus disorder prediction 857 878 - -
Arla5g01030 2332 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1255 1396 IPR024557 -
Arla5g01030 2332 MobiDBLite consensus disorder prediction 746 834 - -
Arla5g01030 2332 MobiDBLite consensus disorder prediction 746 802 - -
Arla5g01030 2332 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 572 748 IPR032193 -
Arla5g01030 2332 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 409 548 IPR032194 -
Arla5g01030 2332 Gene3D - 579 750 IPR038535 -
Arla5g01030 2332 FunFam Transcription regulator 1789 2087 - -
Arla5g01030 2332 CDD NOT1-connector 1583 1758 - -
Arla5g01030 2332 FunFam CCR4-NOT transcription complex subunit 1 2084 2314 - -
Arla5g01030 2332 Gene3D - 874 1125 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arla5g01030 K12604 CCR4-NOT transcription complex subunit 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Arla Arla-Chr13:18983792 Arla5g01030 Arla-Chr5:28254157 dispersed