AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arla7g00034 ATGGGAACGAGAACGAACTTCTACAAGAACCCTTCTTTTACATACAACAAAGATTTCGATCTCAACTCTGTTCTGCAAAACCTAAAGGCTTATAATGCTGCCACCGGAAACCCCACTCCACCGGAGGAAGAACCAGTCCCCGGTAACGAAAAATTCGGCTTACAATCCAACCGCCGCAAGCGACGGAGGATTTCGTCGCCTCCGGAGAAAAGACATAAAATTGAAGAAAGTGATGGGCCCATGTCTCACCATGATTATATTCAGAAAATGAGGAAGGAAGCTAATTCAACTCAAGCCTTTGAAGAATTAAATAATAATGTGTTGGAGGGTTCAGCCTCTGGTGTAGGATTAGTGGGGTATGATAGTGATAATAGTACCTCCTCCCAAGGTGAAGAGAATCAGGAGCCTCACATATCTGGTTTGATCCCGGATATCAGTGAAGAGAAGGATCCTCATATTGCTGGAAATATAAACACTGCCAATCATGTAAAAGAAAGAAGTGAGCAGCGGTTTCCTGTTCCTGGAGAGCCTGCATGTGTGATCTGTGGCAAATATGGGGAATATATATGCGACGAGACTGATGATGATATCTGCAGCATCGACTGCAAAGCTGAGCTACTGGAGAATCTCAAGAGTTCTCAGAGGCCTCCAAGCAACCAACGTTTAGTTGAGGTGTCATCTGGACCTAAATTCCCGTTACAAATTGTTGAAAGTGGAGGAGACACTTGGGATTTCAACCGTCATCGCTGGTCAACAAAGAGATCTAGCCTATGTACTTATGAATGTTGGAAATGCAAGAAGGCTGGTCATCTTGCTGAAGATTGTTTAGTCATAACGTCAATCCCTCAATCTTTCTCCTCTGGCCTCCAGGCCTCATCATCTACAAAGAGATCAAGTGTTATACCCAAGGATCTTCTTGAACTATACAAAAGATGCCACCAAATCAGCAAGAAGTCCACAGCAGCCAAGTGCAACGCCTGCCATAGGTTATCTACTTTGGCCATGTGCCTTGATTGTGGCATGACATTTTGTGATAGTGCAGGACACTTGGTTGAGCATATCCAAACACACCCTTCCCACAGAAAGTTCTATTCTTATAAGCTTAATCGTCTTGTTAAGTGCTGTAAATCAAGTTGCAAGGTGACTGATATCAAGGATCTTCTTGCTTGTCACTTCTGCTTTGATAAAGCCTTTGACAAGTTTTATGACATGTGCAGCGCAACCTGGAAAGCAGCTGGACTTTCAATCATTGCTAACTCCATTTGTTGTGAAGATCACTTTGCTTGGCATAGAATGAATTGCTTGAATGCGGGCGTGGAAGATGGTGCATATATCTTCAAGAAGAAGATGCAGAATGAGAAGCGATCTCAGTTGAGCGATTTCATATTCTAA 1392 43.25 MGTRTNFYKNPSFTYNKDFDLNSVLQNLKAYNAATGNPTPPEEEPVPGNEKFGLQSNRRKRRRISSPPEKRHKIEESDGPMSHHDYIQKMRKEANSTQAFEELNNNVLEGSASGVGLVGYDSDNSTSSQGEENQEPHISGLIPDISEEKDPHIAGNINTANHVKERSEQRFPVPGEPACVICGKYGEYICDETDDDICSIDCKAELLENLKSSQRPPSNQRLVEVSSGPKFPLQIVESGGDTWDFNRHRWSTKRSSLCTYECWKCKKAGHLAEDCLVITSIPQSFSSGLQASSSTKRSSVIPKDLLELYKRCHQISKKSTAAKCNACHRLSTLAMCLDCGMTFCDSAGHLVEHIQTHPSHRKFYSYKLNRLVKCCKSSCKVTDIKDLLACHFCFDKAFDKFYDMCSATWKAAGLSIIANSICCEDHFAWHRMNCLNAGVEDGAYIFKKKMQNEKRSQLSDFIF 463
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arla7g00034 463 Gene3D - 258 311 - -
Arla7g00034 463 Pfam HIT zinc finger 177 203 IPR007529 -
Arla7g00034 463 ProSiteProfiles Zinc finger CCHC-type profile. 262 275 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Arla7g00034 463 SMART c2hcfinal6 261 277 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Arla7g00034 463 SUPERFAMILY Retrovirus zinc finger-like domains 248 275 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Arla7g00034 463 MobiDBLite consensus disorder prediction 68 83 - -
Arla7g00034 463 PANTHER CCHC-TYPE DOMAIN-CONTAINING PROTEIN 1 463 - -
Arla7g00034 463 MobiDBLite consensus disorder prediction 32 83 - -
Arla7g00034 463 Gene3D - 159 216 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arla7g00034 - -