AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arla7g00036 ATGAGAGGAATGGCACATGAAGTTGCAGTTTTCCCACCTCCTCCTATAGAATCAACCAATTCCAAAGAAGGCAGCTTTGGTAGCAATAACAGTCATGAACCTATCTCTGTTCTTGACTCACGCCGGAGCCCTAGCCCTTCCACCTCTATATCTACTCTTTCCTCCTCTTTCGGCGTTTCAGACAACAACATCCAACATAAATGGCCCCAATATTCTGTTCCCCAGGAAATGGGTATTTCTGGGTCTCTGCCAAATCTTGATGGTGGTTGCCGGAAAGACGAGTGGTCGGAGCTACAGCCCATTTATGCGGAATTTGAACTACAACAAAAAAGATTTGGGGTTGGATTAGATGAGGACTGGGAAAGGTTGTTATCTGAATCCGGTGGTTCTCAAGAGCAGAACCAGGATCAGTCCCTTCTCCGGTGGATTTCCGGCGATGACGTCGATGACACTTCCTTTAGCCTCAAGCAGCTCTTGCAGGGAAACCAAATGGACGGAAATGCCCCTCCCACCGCCGTTTTCAAAAACTCACCACCTCTAAATCTCACCCCTCAATTCCCCCCCACCTTCTTCCCATTCCCTTACCCAGGTCTAAACCCACAAAATTTCAACTCACAAATGAATGTTAATGTTAACCCGCCCTTACCGTCACCGCCACTTCAGGTTCAGTTTCACCAATCGGCTCTTCAAAAGCCTCCCGCTTTCGACCAGAGTCATCAAGTTCTACTCAAGAAACAAAACCAGCAATTGTCACTCCACCAACAGAGATGGATGATGGCGGCTGTGGCAAAACAAGAACCACTATCGCCACCACCAGGTGCCGCTGGTCCACCGCCCCATCACCACCAGAAACAGCTTATCTGTGACCAGCTCTACGCCGCGGCTGAGCTAATGCTATCTGGAAATTTCTCCCATGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTTCTTTCGGGCATGGCACCGTATAAGCCTATCGAAAGGTCTGGTTTTTATTTCAAAGAAGCTCTGCAAATGCAAATGGCTTTTCTGATTTCGAAATGTAATCCGACTTCCCTCCCTCGGAGGGTCGTTCCCACACCCTCCAATGGTATGTTCAAGATGTGCGCGTATAAAGTTCTTTCTGAAGTTTCTCCGATTATACAGTTTATGAATTTCACTTCAAATCAAACACTACTTGAAGCCCTTGATGATGCTGATTACATCCACATTATCGATTTCGATATCGGGTTTGGTGCTCAATGGGCTTCTTTCATACAAGAGCTTCCTAGAAGAAAAAACACCAATGCTGGTGGTGGTTGTTCATTGAAGATAACCGCATTCGCTTCACCTTCAACCCACCACCCGGTCGAACTCGGGCTCATGCACGAAAACCTTTCACAGTTTGCTCAAGAAATCGGGATCTCCTTCGAGCTTGAAGTTGTAAACTTCGATTCTTTTGATCCTAATTCGTTTTCGGTTTCTGGGAAGGCGGCGGTCGGTGTGAACTTCCCGATCTGGTCAACTTCAACCCACTTAGCTGCCATTCCCTCGCTTCTGCAGTTGATAAAACGTCTTTCGCCAAGGATCGTGGTGTCGCTTGATCGAGGGTGTGAAAGGACAGATCTAAGCTTCCCACAGTATCTGATGGAGGGGCTTGAGTACTATGAAGGCCTATTGGAATCCATTGATGCTGCCAACATTCCTTCATACACAGCTAACAAGATGGAAAAGTTTTTATTGCAGCCGGAAATCGAAAGCATGGTGATGGGAAAAGTGGAGGTTCCGGAGGCAATGGCGCATTGGAAGACGCTGTTCACGGCGAGCGGTTACTCGGCGGCGGTTATAAGTAATTTTGCAGAAGCACAGGCAGATTGTGTAGTGAAGAGGAGTGAAGTGAGGGGGTTTGATGTAGAGAAGAGGCATGGGTCGCTTGTGCTTTGCTGGAAGAAGCGTCAGGTCATGGCGGCTTCAGCTTGGAAGTGTTGA 1971 48.0 MRGMAHEVAVFPPPPIESTNSKEGSFGSNNSHEPISVLDSRRSPSPSTSISTLSSSFGVSDNNIQHKWPQYSVPQEMGISGSLPNLDGGCRKDEWSELQPIYAEFELQQKRFGVGLDEDWERLLSESGGSQEQNQDQSLLRWISGDDVDDTSFSLKQLLQGNQMDGNAPPTAVFKNSPPLNLTPQFPPTFFPFPYPGLNPQNFNSQMNVNVNPPLPSPPLQVQFHQSALQKPPAFDQSHQVLLKKQNQQLSLHQQRWMMAAVAKQEPLSPPPGAAGPPPHHHQKQLICDQLYAAAELMLSGNFSHAQGILARLNHQLLSGMAPYKPIERSGFYFKEALQMQMAFLISKCNPTSLPRRVVPTPSNGMFKMCAYKVLSEVSPIIQFMNFTSNQTLLEALDDADYIHIIDFDIGFGAQWASFIQELPRRKNTNAGGGCSLKITAFASPSTHHPVELGLMHENLSQFAQEIGISFELEVVNFDSFDPNSFSVSGKAAVGVNFPIWSTSTHLAAIPSLLQLIKRLSPRIVVSLDRGCERTDLSFPQYLMEGLEYYEGLLESIDAANIPSYTANKMEKFLLQPEIESMVMGKVEVPEAMAHWKTLFTASGYSAAVISNFAEAQADCVVKRSEVRGFDVEKRHGSLVLCWKKRQVMAASAWKC 656
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arla7g00036 656 ProSiteProfiles GRAS family profile. 278 655 IPR005202 -
Arla7g00036 656 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 285 654 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Arla7g00036 656 MobiDBLite consensus disorder prediction 18 56 - -
Arla7g00036 656 Pfam GRAS domain family 289 655 IPR005202 -
Arla7g00036 656 MobiDBLite consensus disorder prediction 1 56 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arla7g00036 K27747 protein hairy meristem
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Arla Arla-Chr18:46250200 Arla7g00036 Arla-Chr7:770043 dispersed
Arla Arla-Chr3:96214839 Arla7g00036 Arla-Chr7:770043 dispersed
Arla Arla-Chr11:5544578 Arla7g00036 Arla-Chr7:770043 wgd
Arla Arla-Chr7:770043 Arla9g01053 Arla-Chr9:24754449 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Arla1g00010 . 118 489 GRAS Transcription Factor family AT5G48150 62.466 3.11e-167 482.0
Arla1g00084 . 169 545 GRAS Transcription Factor family AT3G03450 33.5 7.71e-64 217.0
Arla1g00123 . 23 444 GRAS Transcription Factor family AT1G55580 46.136 1.92e-119 354.0
Arla1g00221 . 62 490 GRAS Transcription Factor family AT5G48150 64.138 0.0 573.0
Arla1g00340 . 308 505 GRAS Transcription Factor family AT1G66350 35.122 1.34e-23 95.9
Arla1g00510 . 40 490 GRAS Transcription Factor family AT5G48150 60.6 0.0 579.0
Arla1g01459 ACH 209 584 GRAS Transcription Factor family AT5G66770 25.445 6.51e-20 91.3
Arla1g01460 ACH 242 584 GRAS Transcription Factor family AT5G66770 26.271 2.06e-20 92.8
Arla1g01506 . 264 413 GRAS Transcription Factor family AT4G36710 36.943 4.16e-18 80.1
Arla1g02212 . 86 767 GRAS Transcription Factor family AT1G07530 48.633 0.0 601.0
Arla1g02546 . 37 714 GRAS Transcription Factor family AT2G37650 49.931 0.0 673.0
Arla2g01466 . 41 490 GRAS Transcription Factor family AT5G48150 61.957 0.0 573.0
Arla2g01871 . 154 516 GRAS Transcription Factor family AT5G17490 37.696 7.67e-73 240.0
Arla2g02153 . 197 401 GRAS Transcription Factor family AT5G41920 33.01 5.74e-23 93.2
Arla2g02313 ACH 126 510 GRAS Transcription Factor family AT3G13840 55.224 1.04e-146 427.0
Arla11g00189 . 160 555 GRAS Transcription Factor family AT4G00150 55.156 3.12e-144 431.0
Arla11g00488 . 181 302 GRAS Transcription Factor family AT1G55580 35.246 1.89e-10 55.1
Arla11g00523 . 118 530 GRAS Transcription Factor family AT4G37650 50.23 5.03e-139 406.0
Arla11g00527 . 141 530 GRAS Transcription Factor family AT4G37650 49.502 6.06e-128 378.0
Arla12g00864 . 154 522 GRAS Transcription Factor family AT5G17490 34.085 3.75e-51 179.0
Arla12g00996 . 18 593 GRAS Transcription Factor family AT1G21450 54.892 0.0 607.0
Arla14g00495 . 223 341 GRAS Transcription Factor family AT1G07530 42.017 4.18e-18 77.4
Arla14g00496 ACH 37 486 GRAS Transcription Factor family AT4G36710 50.108 2.31e-136 401.0
Arla14g00698 ACH 126 530 GRAS Transcription Factor family AT4G37650 54.893 3.82e-157 452.0
Arla14g00927 . 181 266 GRAS Transcription Factor family AT1G50420 40.698 4.31e-14 67.0
Arla14g01251 . 144 507 GRAS Transcription Factor family AT1G66350 44.211 8.66e-99 311.0
Arla15g00010 . 40 444 GRAS Transcription Factor family AT1G55580 50.474 6.96e-130 382.0
Arla15g00194 . 41 490 GRAS Transcription Factor family AT5G48150 64.444 0.0 598.0
Arla15g00290 . 156 529 GRAS Transcription Factor family AT1G14920 35.162 7.46e-73 240.0
Arla16g00112 ACH 161 547 GRAS Transcription Factor family AT3G03450 24.257 1.96e-17 83.2
Arla16g00113 ACH 152 515 GRAS Transcription Factor family AT5G17490 25.789 3.35e-21 94.7
Arla16g00507 . 316 767 GRAS Transcription Factor family AT1G07530 50.552 9.27e-163 483.0
Arla16g00508 . 388 768 GRAS Transcription Factor family AT1G07530 52.493 1.06e-149 444.0
Arla16g00509 . 20 767 GRAS Transcription Factor family AT1G07530 48.627 0.0 657.0
Arla17g00005 ACH 250 651 GRAS Transcription Factor family AT3G54220 81.127 0.0 662.0
Arla17g00220 . 73 713 GRAS Transcription Factor family AT2G37650 51.78 0.0 659.0
Arla17g00574 . 25 767 GRAS Transcription Factor family AT1G07530 49.004 0.0 654.0
Arla18g00468 . 1 584 GRAS Transcription Factor family AT5G66770 57.647 0.0 602.0
Arla18g00486 ACH 37 485 GRAS Transcription Factor family AT4G36710 50.542 1.25e-140 412.0
Arla18g00608 ACH 133 530 GRAS Transcription Factor family AT4G37650 65.75 0.0 531.0
Arla18g00620 . 12 409 GRAS Transcription Factor family AT3G49950 61.446 0.0 512.0
Arla3g00387 . 263 413 GRAS Transcription Factor family AT4G36710 37.975 1.55e-18 84.7
Arla3g00642 . 4 482 GRAS Transcription Factor family AT1G50420 66.806 0.0 649.0
Arla3g01352 . 23 529 GRAS Transcription Factor family AT1G14920 62.936 0.0 664.0
Arla3g01401 . 442 767 GRAS Transcription Factor family AT1G07530 60.245 1.52e-143 430.0
Arla3g01638 ACH 37 486 GRAS Transcription Factor family AT4G36710 49.458 2.80e-137 404.0
Arla3g01742 ACH 118 530 GRAS Transcription Factor family AT4G37650 60.192 4.26e-177 506.0
Arla3g01809 . 55 102 GRAS Transcription Factor family AT2G29060 60.417 3.45e-12 64.3
Arla3g03041 . 86 768 GRAS Transcription Factor family AT1G07530 45.731 0.0 575.0
Arla3g03494 ACH 31 640 GRAS Transcription Factor family AT5G52510 40.895 2.22e-129 393.0
Arla4g00755 ACH 29 640 GRAS Transcription Factor family AT5G52510 45.879 2.09e-145 434.0
Arla4g01072 . 86 767 GRAS Transcription Factor family AT1G07530 45.677 0.0 579.0
Arla4g01892 . 1 582 GRAS Transcription Factor family AT2G01570 61.184 0.0 699.0
Arla5g00214 . 35 405 GRAS Transcription Factor family AT5G41920 68.17 0.0 514.0
Arla5g00305 . 39 582 GRAS Transcription Factor family AT2G01570 61.979 0.0 682.0
Arla5g00607 . 343 515 GRAS Transcription Factor family AT5G17490 35.227 3.23e-24 97.4
Arla5g01426 . 1 525 GRAS Transcription Factor family AT4G17230 55.296 0.0 564.0
Arla5g01702 . 6 409 GRAS Transcription Factor family AT3G49950 45.107 7.53e-119 351.0
Arla6g00253 . 27 529 GRAS Transcription Factor family AT1G14920 48.837 1.53e-161 468.0
Arla6g00665 . 490 581 GRAS Transcription Factor family AT5G52510 43.478 6.94e-16 69.3
Arla6g00727 . 315 411 GRAS Transcription Factor family AT4G36710 37.143 2.00e-10 54.3
Arla6g01220 . 227 507 GRAS Transcription Factor family AT1G66350 34.722 1.53e-56 188.0
Arla6g01320 . 11 297 GRAS Transcription Factor family AT5G48150 51.735 4.11e-100 302.0
Arla6g01321 . 330 490 GRAS Transcription Factor family AT5G48150 78.882 3.35e-95 282.0
Arla6g01401 . 263 425 GRAS Transcription Factor family AT4G36710 37.059 8.00e-19 81.6
Arla6g01647 ACH 1 510 GRAS Transcription Factor family AT3G13840 48.197 3.25e-155 452.0
Arla7g00036 . 205 555 GRAS Transcription Factor family AT4G00150 45.867 2.00e-99 313.0
Arla7g01492 . 26 582 GRAS Transcription Factor family AT2G01570 56.042 0.0 602.0
Arla8g00035 . 40 444 GRAS Transcription Factor family AT1G55580 50.242 5.72e-122 361.0
Arla9g00235 . 32 82 GRAS Transcription Factor family AT5G17490 36.538 8.64e-06 40.0
Arla9g00510 . 159 240 GRAS Transcription Factor family AT1G50420 74.39 1.20e-40 137.0
Arla9g00970 . 170 547 GRAS Transcription Factor family AT3G03450 30.612 1.07e-54 192.0
Arla9g00971 . 147 546 GRAS Transcription Factor family AT3G03450 30.641 8.44e-55 190.0
Arla9g01053 . 186 555 GRAS Transcription Factor family AT4G00150 45.195 1.71e-96 307.0
Arla9g01177 . 1 654 GRAS Transcription Factor family AT1G63100 50.789 0.0 593.0
Arla10g00522 . 4 482 GRAS Transcription Factor family AT1G50420 64.108 0.0 603.0
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Arla GRAS 3.9e-83 CL0063 TF GRAS