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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arla9g01575 ATGGGTACAATGGAGCTTCTCAATGTCGAACCTTTAGAGCTCAAATTCCCATTTGAATTAAAGAAACAGATCTCTTGCTCGTTACAGTTATCGAATAAGACCGAGAACTATGTAGCTTTCAAGGTGAAGACGACGAATCCAAAGAAGTATTGCGTTCGTCCGAATACCGGAGTAGTTTTGCCTCGATCAACATGTGACGTAATAGTAACAATGCAAGCTCAGAAGGAAGCTCCTCCTGACATGCAATGTAAGGACAAGTTTTTGCTTCAGAGTGTAGCTGCAAGCCCAGGAACAGCCCCAAAGGACATTACCCCGGAAATGTTCAGTAAGAATTCAGGGAGTGTTGTGGAAGAGTGCAAATTGAAAGTGGTATATCTTCCCCCACCCCAACCACCTTCACCCGTTCTTGAGGAACCCGATGAAGGAATGTCACCAAAGGTGTCCTTCACGGAAAGCACAAACCTCAACTCATCTCAGTCATCTCAGTCATCTGAGGCTCCAAGACAATATGTAGATTCTCAGGATAAACTCTTAGACGCAAGATCTATCATTGCAAAGTTGGTTGAAGAGAAGAATGCTGCTATTCAACAAAGCAACAAACTTCAACAAGAAATGGTGAGATATCTTTTATCCCATATACATTCTTTCATGCTTTTAAGCCTTTCTTTTGCCAACAAATATCTTACTCCCAGACCCTACCTTCGGATGAAATATACTGACTCTGTTTTTTGTTCTTTGCTAACTAACATCGCTCCAAATAAATTATTATCAATTCCAAAGGGCAAAGATCATTGTTTTATCGTTGATTGCGCTGTGTGTGTTCTGCCTTCCTCCCTTTTCATATGTTTACTATGCACCCATTAG 864 41.2 MGTMELLNVEPLELKFPFELKKQISCSLQLSNKTENYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQAQKEAPPDMQCKDKFLLQSVAASPGTAPKDITPEMFSKNSGSVVEECKLKVVYLPPPQPPSPVLEEPDEGMSPKVSFTESTNLNSSQSSQSSEAPRQYVDSQDKLLDARSIIAKLVEEKNAAIQQSNKLQQEMVRYLLSHIHSFMLLSLSFANKYLTPRPYLRMKYTDSVFCSLLTNIAPNKLLSIPKGKDHCFIVDCAVCVLPSSLFICLLCTH 287
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arla9g01575 287 MobiDBLite consensus disorder prediction 130 171 - -
Arla9g01575 287 Pfam MSP (Major sperm protein) domain 7 111 IPR000535 -
Arla9g01575 287 Gene3D Immunoglobulins 2 129 IPR013783 -
Arla9g01575 287 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 4 218 IPR016763 GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Arla9g01575 287 FunFam Vesicle-associated protein 1-1 1 129 - -
Arla9g01575 287 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Arla9g01575 287 SUPERFAMILY PapD-like 5 139 IPR008962 -
Arla9g01575 287 Coils Coil 184 204 - -
Arla9g01575 287 MobiDBLite consensus disorder prediction 146 170 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arla9g01575 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
14024 Arla11g00829 Arla9g01575
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Arla Arla-Chr13:23500086 Arla9g01575 Arla-Chr9:55051528 dispersed
Arla Arla-Chr3:84617185 Arla9g01575 Arla-Chr9:55051528 dispersed
Arla Arla-Chr7:15836649 Arla9g01575 Arla-Chr9:55051528 transposed
Arla Arla-Chr11:5613384 Arla9g01575 Arla-Chr9:55051528 wgd