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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arla9g01577 ATGGCTGCCTACACCTACATTTTGTACTTGTTCTTCTGCTTCATTTTCTTCACTCCTTCTTCCACGTCATCATCCAATTCCACCGCCACCGCCACCCCCAATCACAAGTGGGTTGGCCCCTCCGGCCACCGTCATATCACCGTTGACATCTATGGATTCGGTGACTACACCACGGTTCAGGCCGCCGTAGACTCCGTTTCCACAAATAACCACAAGAATATCCTCATTCATATCACCGCCGGTGTTTACGTAGAAAAGGTGGTGGTTCCGGCGAGTAAACCGTACATAACTTTCGAAGGGGAAGGGAGGAATAGGACGGTGATAGAATGGCATGACAGAGCAAGTGACCGTGGGCCAGATGGGCAGCAGCTGCGTACTTATCAGACAGCTTCGGTCACCGTCTATGCTAACTATTTCTCTGCCCGTAACATTAGCTTTAAGAATACGGCGCCGGCGCCAATGCCGGGAATGCATGGGTGGCAAGCGGCGGCGTTTCGTATTTCCGGCGACAAAGCGTATTTCTCCGGGTGTGGATTTTATGGGGCGCAGGATACTTTATGTGACGATGCGGGTCGTCATTATTTCAAGGAGTGTTATATTGAGGGTTCCATAGACTTCATTTTTGGCAATGGTCGTTCCATGTACAAAGATTGCGAGTTGCATTCAATAGCAAAGAGATTTGGATCAATCGCAGCACAAGATAGAAGAATCCCTGACGATAAGAGCGGTTTTGCTTTCGTGGGGTGTAAGGTGACAGGTACCGGGCCATTGTACGTTGGACGAGCCATGGGTCAGTACTCTCGGATTGTCTACTCGTACACCTATTTTGATGACGTTGTTGCCCATGGTGGTTGGGATGATTGGGACCATACGGGCAACAAAAGCAAGACAGCGTTTTTTGGAGTGTACAGATGCTGGGGCCCAGGGGCAGCAGCAGTCCGAGGAGTATCGTGGGCCCGCGAGTTAGATTACGAATCTGCCCATAAATTTCTCGTGAAGAGCTTTGTCAATGGACGACATTGGATTGCCCCTGCTGATGCTTAG 1044 50.19 MAAYTYILYLFFCFIFFTPSSTSSSNSTATATPNHKWVGPSGHRHITVDIYGFGDYTTVQAAVDSVSTNNHKNILIHITAGVYVEKVVVPASKPYITFEGEGRNRTVIEWHDRASDRGPDGQQLRTYQTASVTVYANYFSARNISFKNTAPAPMPGMHGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIAKRFGSIAAQDRRIPDDKSGFAFVGCKVTGTGPLYVGRAMGQYSRIVYSYTYFDDVVAHGGWDDWDHTGNKSKTAFFGVYRCWGPGAAAVRGVSWARELDYESAHKFLVKSFVNGRHWIAPADA 347
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arla9g01577 347 Gene3D - 41 346 IPR012334 -
Arla9g01577 347 SUPERFAMILY Pectin lyase-like 44 344 IPR011050 -
Arla9g01577 347 Pfam Pectinesterase 46 338 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Arla9g01577 347 ProSitePatterns Pectinesterase signature 2. 200 209 IPR033131 -
Arla9g01577 347 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 14 343 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Arla9g01577 347 FunFam Pectinesterase 41 344 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arla9g01577 K01051 pectinesterase [EC:3.1.1.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Arla Arla-Chr5:13467241 Arla9g01577 Arla-Chr9:55217455 dispersed
Arla Arla-Chr6:5798856 Arla9g01577 Arla-Chr9:55217455 dispersed
Arla Arla-Chr9:1779372 Arla9g01577 Arla-Chr9:55217455 dispersed
Arla Arla-Chr9:55217455 Arla9g01767 Arla-Chr9:79262278 dispersed
Arla Arla-Chr9:55217455 Arla14g01013 Arla-Chr14:64857896 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Arla1g00228 . 30 380 Carbohydrate Esterase gene family AT5G55590 62.57 1.34e-146 417.0
Arla1g00732 ACH 4 315 Carbohydrate Esterase gene family AT1G19190 40.446 4.77e-82 248.0
Arla1g00733 . 4 321 Carbohydrate Esterase gene family AT3G48690 45.912 1.20e-91 275.0
Arla1g01143 . 15 543 Carbohydrate Esterase gene family AT3G05620 66.231 0.0 716.0
Arla1g01144 . 8 625 Carbohydrate Esterase gene family AT3G05610 44.31 0.0 588.0
Arla1g01236 ACH 1 416 Carbohydrate Esterase gene family AT5G26670 69.139 0.0 602.0
Arla1g02487 . 6 282 Carbohydrate Esterase gene family AT2G41530 83.453 1.26e-179 494.0
Arla1g02553 . 1 612 Carbohydrate Esterase gene family AT2G26450 47.84 0.0 577.0
Arla1g02949 . 1 588 Carbohydrate Esterase gene family AT2G47030 37.724 1.91e-130 392.0
Arla1g02952 . 6 581 Carbohydrate Esterase gene family AT3G62170 36.227 2.49e-109 340.0
Arla2g00019 . 1 359 Carbohydrate Esterase gene family AT5G61570 50.0 3.02e-112 329.0
Arla2g00110 . 29 324 Carbohydrate Esterase gene family AT5G16080 35.314 2.28e-51 171.0
Arla2g00509 . 37 536 Carbohydrate Esterase gene family AT5G51490 52.756 0.0 542.0
Arla2g00524 . 35 312 Carbohydrate Esterase gene family AT5G16080 37.113 1.18e-50 169.0
Arla2g00558 . 41 312 Carbohydrate Esterase gene family AT5G16080 38.889 4.10e-54 178.0
Arla2g02347 . 4 582 Carbohydrate Esterase gene family AT1G53840 55.214 0.0 639.0
Arla2g02349 . 13 592 Carbohydrate Esterase gene family AT3G14310 65.365 0.0 751.0
Arla11g00146 ACH 59 329 Carbohydrate Esterase gene family AT5G16080 32.258 6.45e-42 146.0
Arla11g00181 ACH 53 220 Carbohydrate Esterase gene family AT1G53830 26.554 1.22e-10 58.2
Arla11g00182 . 2 511 Carbohydrate Esterase gene family AT2G45220 61.612 0.0 649.0
Arla11g00183 . 9 511 Carbohydrate Esterase gene family AT2G45220 66.023 0.0 694.0
Arla11g00749 . 3 375 Carbohydrate Esterase gene family AT4G19420 53.175 4.59e-154 438.0
Arla11g00750 . 11 375 Carbohydrate Esterase gene family AT4G19420 52.589 7.11e-154 438.0
Arla11g00897 ACH 7 389 Carbohydrate Esterase gene family AT4G19420 64.416 0.0 550.0
Arla11g00898 ACH 6 389 Carbohydrate Esterase gene family AT4G19420 62.078 0.0 522.0
Arla11g00995 . 94 122 Carbohydrate Esterase gene family AT1G57590 75.862 5.51e-08 52.8
Arla11g01269 . 62 216 Carbohydrate Esterase gene family AT1G53830 29.936 7.64e-16 73.2
Arla11g01270 ACH 61 213 Carbohydrate Esterase gene family AT3G14310 29.032 1.67e-17 79.3
Arla11g01271 . 66 218 Carbohydrate Esterase gene family AT1G53830 27.95 9.64e-14 66.6
Arla12g00009 . 38 592 Carbohydrate Esterase gene family AT3G14310 52.289 0.0 553.0
Arla12g00541 . 4 325 Carbohydrate Esterase gene family AT3G48700 46.462 9.07e-98 292.0
Arla13g00209 ACH 41 321 Carbohydrate Esterase gene family AT5G16080 34.122 1.98e-46 159.0
Arla13g00210 . 36 321 Carbohydrate Esterase gene family AT5G16080 33.445 1.49e-49 166.0
Arla13g00281 ACH 75 224 Carbohydrate Esterase gene family AT5G53370 28.571 7.87e-12 62.0
Arla13g00282 ACH 49 220 Carbohydrate Esterase gene family AT1G53830 26.374 7.46e-09 53.1
Arla13g00283 . 39 225 Carbohydrate Esterase gene family AT5G53370 26.829 4.40e-12 62.4
Arla13g00284 . 39 224 Carbohydrate Esterase gene family AT5G53370 26.263 2.98e-10 57.0
Arla13g00288 . 11 511 Carbohydrate Esterase gene family AT2G45220 66.603 0.0 705.0
Arla14g01013 ACH 59 362 Carbohydrate Esterase gene family AT5G47500 38.291 1.22e-71 224.0
Arla14g01206 ACH 1 446 Carbohydrate Esterase gene family AT5G14310 67.527 0.0 620.0
Arla15g01048 . 2 247 Carbohydrate Esterase gene family AT1G53840 36.576 1.22e-37 137.0
Arla16g00970 . 18 560 Carbohydrate Esterase gene family AT5G49180 34.798 2.15e-97 306.0
Arla16g01007 . 49 532 Carbohydrate Esterase gene family AT4G02300 52.13 5.12e-179 514.0
Arla16g01008 . 34 518 Carbohydrate Esterase gene family AT4G02320 51.815 4.50e-179 514.0
Arla16g01009 . 18 567 Carbohydrate Esterase gene family AT4G02330 57.371 0.0 648.0
Arla16g01010 . 168 558 Carbohydrate Esterase gene family AT2G47550 46.954 1.42e-108 325.0
Arla16g01011 . 9 571 Carbohydrate Esterase gene family AT4G02330 50.617 0.0 581.0
Arla16g01024 . 62 216 Carbohydrate Esterase gene family AT3G14310 31.646 1.63e-16 75.1
Arla16g01081 ACH 1 343 Carbohydrate Esterase gene family AT3G63010 74.063 0.0 544.0
Arla17g00240 . 5 427 Carbohydrate Esterase gene family AT3G09410 62.175 0.0 566.0
Arla17g00950 . 23 118 Carbohydrate Esterase gene family AT3G16970 30.612 6.13e-08 47.0
Arla17g01030 ACH 1 358 Carbohydrate Esterase gene family AT3G63010 72.928 0.0 548.0
Arla17g01085 . 18 571 Carbohydrate Esterase gene family AT4G02330 59.64 0.0 663.0
Arla18g00096 . 5 561 Carbohydrate Esterase gene family AT3G10710 54.064 0.0 616.0
Arla18g00722 . 41 422 Carbohydrate Esterase gene family AT3G02410 73.822 0.0 600.0
Arla18g00793 ACH 59 362 Carbohydrate Esterase gene family AT5G47500 37.736 1.99e-70 221.0
Arla3g00972 . 146 198 Carbohydrate Esterase gene family AT1G53840 35.849 9.30e-10 51.2
Arla3g01195 . 36 546 Carbohydrate Esterase gene family AT5G09760 67.188 0.0 709.0
Arla3g01196 . 33 325 Carbohydrate Esterase gene family AT5G09760 54.949 3.30e-100 303.0
Arla3g01197 . 331 546 Carbohydrate Esterase gene family AT5G09760 71.759 4.37e-120 350.0
Arla3g01224 . 1 342 Carbohydrate Esterase gene family AT3G05120 77.586 0.0 560.0
Arla3g01647 . 1 342 Carbohydrate Esterase gene family AT5G16080 52.436 2.17e-116 338.0
Arla3g02108 ACH 1 446 Carbohydrate Esterase gene family AT5G14310 67.597 0.0 622.0
Arla3g03356 . 1 359 Carbohydrate Esterase gene family AT5G61570 50.4 4.22e-109 322.0
Arla3g03390 . 82 594 Carbohydrate Esterase gene family AT3G47400 54.563 0.0 566.0
Arla3g03392 ACH 53 222 Carbohydrate Esterase gene family AT1G53830 35.26 9.71e-23 93.2
Arla3g03393 ACH 30 227 Carbohydrate Esterase gene family AT5G53370 30.144 1.68e-17 78.2
Arla3g03398 . 11 504 Carbohydrate Esterase gene family AT2G45220 59.316 0.0 638.0
Arla3g03399 . 6 511 Carbohydrate Esterase gene family AT2G45220 41.098 8.97e-133 394.0
Arla3g03485 . 8 407 Carbohydrate Esterase gene family AT5G23870 62.935 0.0 535.0
Arla3g03557 . 41 597 Carbohydrate Esterase gene family AT3G49220 68.134 0.0 794.0
Arla3g03558 . 495 709 Carbohydrate Esterase gene family AT5G36210 21.778 5.43e-06 48.1
Arla4g00409 . 42 204 Carbohydrate Esterase gene family AT1G25141 30.114 8.13e-10 57.0
Arla4g00715 . 1 587 Carbohydrate Esterase gene family AT5G53370 63.105 0.0 778.0
Arla4g00807 . 245 367 Carbohydrate Esterase gene family AT1G53840 50.0 1.78e-27 111.0
Arla4g00842 . 51 216 Carbohydrate Esterase gene family AT1G53830 34.731 4.53e-25 100.0
Arla4g00843 ACH 62 216 Carbohydrate Esterase gene family AT1G53830 34.839 1.29e-22 94.4
Arla4g00844 . 59 216 Carbohydrate Esterase gene family AT3G14310 23.418 1.89e-14 68.9
Arla4g00845 ACH 59 218 Carbohydrate Esterase gene family AT3G14310 29.878 4.97e-22 90.9
Arla4g00863 . 51 216 Carbohydrate Esterase gene family AT1G53830 36.747 5.07e-25 103.0
Arla4g00866 . 37 536 Carbohydrate Esterase gene family AT5G51490 52.183 0.0 537.0
Arla4g00889 . 33 359 Carbohydrate Esterase gene family AT5G61570 52.616 9.34e-116 338.0
Arla4g00922 . 3 359 Carbohydrate Esterase gene family AT1G69940 50.278 7.63e-135 387.0
Arla4g01728 . 31 422 Carbohydrate Esterase gene family AT3G02410 61.055 2.52e-179 508.0
Arla4g01909 . 18 554 Carbohydrate Esterase gene family AT1G23200 52.468 0.0 524.0
Arla4g01910 ACH 59 219 Carbohydrate Esterase gene family AT3G14310 27.879 3.62e-16 74.3
Arla4g01911 ACH 87 238 Carbohydrate Esterase gene family AT3G49220 32.298 4.32e-16 73.9
Arla5g00295 ACH 75 226 Carbohydrate Esterase gene family AT5G53370 28.221 1.44e-17 78.6
Arla5g00410 . 9 331 Carbohydrate Esterase gene family AT1G68620 52.096 7.16e-116 337.0
Arla5g00546 . 80 341 Carbohydrate Esterase gene family AT5G55590 63.139 5.02e-114 333.0
Arla5g00703 . 28 342 Carbohydrate Esterase gene family AT5G16080 34.94 1.51e-59 193.0
Arla6g00003 . 1 525 Carbohydrate Esterase gene family AT4G33220 60.185 0.0 662.0
Arla6g00004 . 38 547 Carbohydrate Esterase gene family AT2G26440 62.33 0.0 647.0
Arla6g00009 . 59 583 Carbohydrate Esterase gene family AT1G53830 43.551 1.82e-137 410.0
Arla6g00212 . 60 357 Carbohydrate Esterase gene family AT5G47500 48.495 6.21e-101 301.0
Arla6g00464 . 325 423 Carbohydrate Esterase gene family AT4G02320 50.505 1.35e-27 104.0
Arla6g00657 . 2 313 Carbohydrate Esterase gene family AT1G19190 37.309 6.34e-67 211.0
Arla6g01184 ACH 4 326 Carbohydrate Esterase gene family AT3G48700 43.827 2.46e-88 266.0
Arla6g01245 . 17 359 Carbohydrate Esterase gene family AT5G47500 39.769 4.04e-85 259.0
Arla6g01690 . 54 592 Carbohydrate Esterase gene family AT3G14310 64.207 0.0 711.0
Arla6g01691 . 1 582 Carbohydrate Esterase gene family AT1G53840 58.151 0.0 678.0
Arla7g00066 ACH 53 213 Carbohydrate Esterase gene family AT3G14310 28.221 9.69e-20 84.7
Arla7g00510 ACH 25 375 Carbohydrate Esterase gene family AT4G19420 43.626 4.25e-109 321.0
Arla7g00513 ACH 1 375 Carbohydrate Esterase gene family AT4G19420 53.439 1.37e-155 442.0
Arla7g00519 . 7 554 Carbohydrate Esterase gene family AT1G23200 40.989 5.53e-131 389.0
Arla7g00563 . 12 567 Carbohydrate Esterase gene family AT3G05610 46.333 0.0 545.0
Arla7g00622 . 25 206 Carbohydrate Esterase gene family AT1G25141 27.027 1.78e-07 49.7
Arla7g00793 . 1 446 Carbohydrate Esterase gene family AT5G14310 61.074 0.0 536.0
Arla7g01478 . 26 310 Carbohydrate Esterase gene family AT1G24793 58.246 4.00e-119 344.0
Arla7g01847 . 30 330 Carbohydrate Esterase gene family AT1G68620 39.355 5.27e-71 221.0
Arla8g00594 ACH 3 325 Carbohydrate Esterase gene family AT3G48700 39.009 4.18e-76 235.0
Arla8g01064 ACH 4 416 Carbohydrate Esterase gene family AT5G26670 66.114 0.0 593.0
Arla8g01128 . 2 326 Carbohydrate Esterase gene family AT3G48700 40.841 5.00e-81 248.0
Arla9g00089 . 18 332 Carbohydrate Esterase gene family AT2G19150 43.03 3.20e-88 268.0
Arla9g00591 . 28 344 Carbohydrate Esterase gene family AT5G16080 33.127 2.18e-52 174.0
Arla9g00843 . 411 518 Carbohydrate Esterase gene family AT4G02320 56.481 3.29e-36 127.0
Arla9g00844 . 383 403 Carbohydrate Esterase gene family AT1G53840 80.952 2.34e-07 45.1
Arla9g01512 . 231 566 Carbohydrate Esterase gene family AT3G05610 54.599 4.02e-132 404.0
Arla9g01577 . 15 362 Carbohydrate Esterase gene family AT5G47500 75.0 0.0 540.0
Arla9g01711 . 402 477 Carbohydrate Esterase gene family AT4G02330 53.947 5.94e-22 86.3
Arla9g01766 . 493 695 Carbohydrate Esterase gene family AT5G36210 27.65 1.66e-18 88.6
Arla9g01767 . 68 341 Carbohydrate Esterase gene family AT1G05310 71.533 9.56e-155 438.0
Arla10g00575 . 4 327 Carbohydrate Esterase gene family AT3G48700 45.062 7.14e-93 279.0
Arla10g01011 . 37 118 Carbohydrate Esterase gene family AT3G16970 32.558 5.67e-09 48.5
Arla10g01469 . 21 729 Carbohydrate Esterase gene family AT5G36210 70.448 0.0 1035.0
Arla10g01558 ACH 91 388 Carbohydrate Esterase gene family AT1G05310 56.376 6.24e-124 362.0
Arla10g01765 . 58 361 Carbohydrate Esterase gene family AT5G47500 38.312 8.47e-76 236.0