AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi18g00004 ATGGAAAGCAATAGTTATAGATGGAAAGGACATATAGACAGGGAAGTCATTCGATTGGAACGTGAAGCGGTAATTCCAGTTTTGAAGCCTAAGCTCATCATGACTTTGGCCAATCTCATTGAACAGAGTTCTGACCGGGCAGAGTTCTTGAAGCTCTGCAAGAGAGTTGAGTACACGATTCGAGCATGGTATCTTCTTCAGTTTGAAGATCTTATGCAATTATATGCACTCTTTGATCCTGTTTATGGGGCTCAGAAATTGGAGCAGCAGAAATTATCCTCCGAAGAGATTGATGTCCTCGAACAGAACTTCTTGAACTATATGTTTAAGGTAATGGAAAAGAGTAATTTTAAGATTGCTACCAATGATGAGATTGCAATTGCACAATCAGGGCAGTATCTTCTCAATCTTCCCATCTCAGTCGATGAATCAAAGCTTGATAAGAAGCTACTGAAGAAGTACTTTGCGGATCATCCTCGAGAAAACCTTCCTGACTTTGCAGATAAGTATGTAATCTTTCGACGTGGCATTGGAATTGATCGGACAACTGATTACTTTTTCCTGGAGAAGGTGGACATGATAATTGCGCGCATATGGGGGTGGATCATGAGAGTAACTAGACTAGAAAAGATATTTTCAAGAAAATTAATTGCGCCATTTAAGAAAGCTATTAAGAAAGATGATGAAACCACAGAAGACGAAGAATTTCAGGATGATTTGTATGTTGAGCGGATCCGGATTGAAAATTTGGACTTCAGTTTACAGAATTTGGCGAGTAAGATTACAATCCAAGAACCTACTTTTGACAGGATAATTGTGGTTTACAGGCGAGCAGGTAGCAGCAAGGTAAAAAAGGAGCGAGGAATCTTTGTGAAGCATTTAAAACAGATCCCAATGGCAGATATGGAAATAGTCCTGCCTGAGAAGAAAAATCCAAGTCTAACCCCTATGGACTGGGTGAAATTTCTTACAACTGCTGTACTGGGACTGGGAGCTGCCACTGGTTCAATTGAGACTCCTCAAGCTGATTTTTGGGTCATTGTTGCCGTCATCTCTACAGTAGTTGGTTACTGTGCCAAAATATACTTTACGTTTCAGGCAAATATGGATACATATCAGAACTTAATTACACAGTTCATGTATGACAAACAATTGGATAGTGGAAAAGGAACTCTTCTTCATTTGTGTGATGATGTGATTCAACAAGAAGTAAAAGAGGTGATCATTTCTTTCTTTATCTTAATGGAACAGGGGAAAGCTACTCTAAAGGAACTCGACATGAAATGCGAGGAACTAATAAAGGAAGAGTTTGGTGAGAGATGCAACTTCGATGTGGATGATGCAGTCCAGAAATTAGAAAAGTTGGGCATTATTGCTAAGGATACAATAGGAAGGTATTACTGTGTTGGTCTTAAACGTGCGAATGAGATCATTGGCACCACCACAGAAGAGCTGGTACTTAAGGCAAGACAGGAGGGCGGTGCTTAA 1488 39.92 MESNSYRWKGHIDREVIRLEREAVIPVLKPKLIMTLANLIEQSSDRAEFLKLCKRVEYTIRAWYLLQFEDLMQLYALFDPVYGAQKLEQQKLSSEEIDVLEQNFLNYMFKVMEKSNFKIATNDEIAIAQSGQYLLNLPISVDESKLDKKLLKKYFADHPRENLPDFADKYVIFRRGIGIDRTTDYFFLEKVDMIIARIWGWIMRVTRLEKIFSRKLIAPFKKAIKKDDETTEDEEFQDDLYVERIRIENLDFSLQNLASKITIQEPTFDRIIVVYRRAGSSKVKKERGIFVKHLKQIPMADMEIVLPEKKNPSLTPMDWVKFLTTAVLGLGAATGSIETPQADFWVIVAVISTVVGYCAKIYFTFQANMDTYQNLITQFMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATLKELDMKCEELIKEEFGERCNFDVDDAVQKLEKLGIIAKDTIGRYYCVGLKRANEIIGTTTEELVLKARQEGGA 495
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi18g00004 495 PANTHER AMINOPEPTIDASE (DUF3754) 13 492 - -
Armi18g00004 495 Coils Coil 415 435 - -
Armi18g00004 495 Pfam Protein of unknown function (DUF3754) 268 390 IPR022227 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi18g00004 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
19974 Armi18g00004 Armi4g03190
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr18:52557395 Armi18g00004 Armi-Chr18:212591 transposed
Armi Armi-Chr18:212591 Armi4g03190 Armi-Chr4:118672359 wgd