AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi18g00017 ATGTACATGCACATGCACATCAACATGAACGACTTCACAAAAGAGATCTATATTTGTTTATTAATGCAACCACAGGTGTTTGTGTCTCAACCATTATTAATCTCCAATCAATGCAACTACATGCTTCATAACTCATCTTCTTCTTCTTCAAGATTACAATTCAACATGGGGTGTGCTGCTTCAGTTTACAGAGTTGGAGGCACCAAGAAGCAACATATGAACATCCCTCTTGTTACAATACTTGCACCGTCCCTTCGTATTCCTTTGCCCTCCAATATTCAAAACCCCCTTAAAGGCCTTGTTCCTAAGGATCTTTCCCATCGTCTCACCTCATTCCGCAATCAAATTACACTCCTTGCCCAACACCAAAACCAAAACCCTGCAGATGATGAGGTTGCATCAGCTCTTCCTGAATTACTACATGCATTGGAGGACTACTTGTCGTTATTAGTTGGACTTACTGATCAAGAACTTGGTTTGCAACAACTCATTGAATTCAAATGGAAAAGCTTAGATGATGGACAACGACAAGAAATATGTATTGCAGATTCCTGGTTTGAATTACTCTCTGTTGTTCACATGATGGCTATGCTCACCTTGATGGAGGCAAACTCAAAATTGATCCCTCATCAAAATGTTTCTACTCAACCACTTGAATCTACAGATAACATACGCTGTGCTGTCGATTTATTGGTGAAGGCAGCTGGGTACCTGCAATTCTGTCTTAATGAGATTCTTGTCCATATTCCACCTCATATCAAGACGAAGCTGCCTGCAGATTTGCAGGAGAGTGTACTCGAGGCTGCTTATATTCAAGCATTAGGGCAGGGAACTGAAATGCAGCTTGCTTCAGCTGTAGAAAGTCGAAATGCCACTCTATCTGTCAAGAGAAGACTGGCATGCGAGCAACTAAGCTATTTCAGTCAAGCTCACTACTGCTTGTCAACCTGTGAAAACCTTAATGGATATGGAAAGAAGCATCTGTCATTTATCAAATGGAAGTACCTTGAGGCAAAGGCTGCGGCATACTACTACCATGGCCTGATCACGGACAAGGGTAGTGAACCATCCTGCCACATCAGTGCAGTGTGTTGTTTTCTTGCTGCAGAAGAAATTCTAACAGAGAGCAAGAAGGCTTGTTTAAACTTTTGCCTAACAGTTCCCATAACAAGGGCTCCTTGCGCATGGGGCGCTATGAAGCATTTGAATAAGAAAATTCCTGAAACCGCAGCTAAAAAGTCCCAGATGTACGCATACCTCTTGGAACAAGAAAAGGGTCTGGAAGTGTTGCCAGAACTCCCAGAGTTTGAGCTGTCATTGAAAGCAGACGAATACGAAATGCCAGATAAAGATGCAGCATGGGAGAGTGAAAAATGGATGATACCTAGCCAAACACTTAAAACTCACTTAACAGACGATGAACAAGATGATATATGA 1437 42.03 MYMHMHINMNDFTKEIYICLLMQPQVFVSQPLLISNQCNYMLHNSSSSSSRLQFNMGCAASVYRVGGTKKQHMNIPLVTILAPSLRIPLPSNIQNPLKGLVPKDLSHRLTSFRNQITLLAQHQNQNPADDEVASALPELLHALEDYLSLLVGLTDQELGLQQLIEFKWKSLDDGQRQEICIADSWFELLSVVHMMAMLTLMEANSKLIPHQNVSTQPLESTDNIRCAVDLLVKAAGYLQFCLNEILVHIPPHIKTKLPADLQESVLEAAYIQALGQGTEMQLASAVESRNATLSVKRRLACEQLSYFSQAHYCLSTCENLNGYGKKHLSFIKWKYLEAKAAAYYYHGLITDKGSEPSCHISAVCCFLAAEEILTESKKACLNFCLTVPITRAPCAWGAMKHLNKKIPETAAKKSQMYAYLLEQEKGLEVLPELPEFELSLKADEYEMPDKDAAWESEKWMIPSQTLKTHLTDDEQDDI 478
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi18g00017 478 SMART BRO1-2 79 466 IPR004328 -
Armi18g00017 478 Gene3D alix-aip1 like domains 100 461 IPR038499 -
Armi18g00017 478 ProSiteProfiles BRO1 domain profile. 83 478 IPR004328 -
Armi18g00017 478 Pfam BRO1-like domain 92 376 IPR004328 -
Armi18g00017 478 PANTHER UNCHARACTERIZED 69 465 IPR038898 -
Armi18g00017 478 CDD BRO1-Alix-like 75 441 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi18g00017 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr18:300774 Armi4g00728 Armi-Chr4:20906694 dispersed