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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi18g00019 ATGGCTGTTGTGAAGGCTGTTCATGTCTCTGATGTACCTCATCTTGATGAGCCCCTCCCTTCATTCTCTCTTTACACCACACCTCTTCCTACCTCAGTAGGAGGAGGATTGGATAATGGAAGTAGGAAATTCATGGTGGTAGGGCATAGAGGTCATGGCATGAACGTCTTACATTCCACCGATCGGAGAATGAAAGCCTACAAAGAGAACTCCATTCTTTCCTTCAACAACGCTGCCAATCACCCTTTAGATTTCATTGAGTTTGACGTTCAGGTCACCAAAGATGACATACCAATCATTTTCCACGACAATTTCATCCTCTCTCAAGAGAACGGTATTGTGGTTGAAAAGCGGGTGACTGATTTGACACTTGAAGAATTCTTTAGCTATGGTCCTCAAAGAGAAGTAGGACAGGTTGGGAAATGTTTGCTTAGGAAAACAAATGGAAATATCGTGGGTTGGGATGTTGAAGCCGATGATCATTCTTGTACCTTACAAGAAGCCTTCCAAAAAGTAAACCCTTGTTTGGGATTCAACATCGAGTTGAAGTTTGATGATTACATCGTATATGATCAACACCATCTCACCCATGTTCTTCAACTCATCTTCAACGTCGTTTCCAAAAACGCCCAACAAAGATCTGTCATTTTCTCAACTTTCCAGCCTGATGCAGCCCTGCTCATGAAGAAACTTCAGCATATTTACCCTGTGTACTTTTTGACAAATGGAGGAAATGAGGTATTTGATGATGTGCGAATGAATTCTTTGGAAGAAGCCAAGAAGGTGGCAATTGAGGGTGGATTGGATGGAATAGTTTCAGAAGTCATGGGTGTTTTTAGAAACCCAATGGTGGTTAGAGAGATTAAAGACTCCAACCTATCCCTCCTTACTTATGGGAAATTGAACAATGTTCCTGAAGCTGTGCAAGTTCAATATCTCATGGGTGTTGAGGGGGTGATTGTAGATTTGGTACAAGAGATTTCAAACGCAGTTGCAGATATGAAGACCAAAACCAAAGATGTAAATGGAGGAGGATTAGAGAAGATTGAGTTGTCATTTCTGCTTACATTGATTTCACAACTCGTACAACATTAA 1095 41.28 MAVVKAVHVSDVPHLDEPLPSFSLYTTPLPTSVGGGLDNGSRKFMVVGHRGHGMNVLHSTDRRMKAYKENSILSFNNAANHPLDFIEFDVQVTKDDIPIIFHDNFILSQENGIVVEKRVTDLTLEEFFSYGPQREVGQVGKCLLRKTNGNIVGWDVEADDHSCTLQEAFQKVNPCLGFNIELKFDDYIVYDQHHLTHVLQLIFNVVSKNAQQRSVIFSTFQPDAALLMKKLQHIYPVYFLTNGGNEVFDDVRMNSLEEAKKVAIEGGLDGIVSEVMGVFRNPMVVREIKDSNLSLLTYGKLNNVPEAVQVQYLMGVEGVIVDLVQEISNAVADMKTKTKDVNGGGLEKIELSFLLTLISQLVQH 364
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi18g00019 364 ProSiteProfiles GP-PDE domain profile. 44 331 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Armi18g00019 364 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 41 337 IPR051578 GO:0046475(PANTHER)
Armi18g00019 364 SUPERFAMILY PLC-like phosphodiesterases 43 325 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Armi18g00019 364 FunFam Glycerophosphodiester phosphodiesterase GDPD2 37 333 - -
Armi18g00019 364 Pfam Glycerophosphoryl diester phosphodiesterase family 49 324 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Armi18g00019 364 Gene3D Phosphatidylinositol (PI) phosphodiesterase 38 332 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi18g00019 K18696 glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
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Event-related genes

Select Gene_1 Gene_2 Event_name
19977 Armi18g00019 Armi4g03169
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr18:314529 Armi4g03169 Armi-Chr4:118264403 wgd
Armi Armi-Chr18:314529 Armi5g01052 Armi-Chr5:24255273 wgd