AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi18g00031 ATGGAAGATGAATATGCAAAACTTATCAGGAGGATGAACCCACCAAGAGTTAAAATCGACAACAAATCTTCTCCAGATGCAACAGTTATCCAGGTTGAAAGTGTTAACAAGCATGGTATCCTACTGGAAGTTGTTCAAGTTCTTGCTGATTTAGATCTCATCATCAAAAAAGCATATATCTCATCTGATGGAGGCTGGTTCATGGATGTGTTCAATGTCATTTGTCAAGACGGAATCAAAATTAGAGATGAAGGAATGATCGATTACATAACCAAGGTGCTTGAAAATGATGCATTTTATGTTCCATCACTGAATGGTTCAGTTGGATTGAAGCCTTCTGAAGATTACACGGCAATCGAACTAGCTGGAACAGATAGACCTGGTTTATTATCTGAAGTGTCTGCAGTTCTAACGGACCTTGGATGTAATGTGGTTAATGCTGAAATATGGACACACAATGCTCGAGCTGCAGCCGTGGTCCATGTCACAGATGATAAGACCAGATGTGCAGTGGAAGACCCGAAGAGGCTCTCTACTATACAAAAACTGCTTTCTAATGTTCTCAAGGGAAACAATGACTTGAGGGCTGCAAAAATGACGCCTGGTTTCATGCACAGACAGAGAAGATTGCATCAAATTATGTTTGCTGAGAGGGATTACGAAAAGTCAGAACAAGAAGAAAAGGAAAATGGATCAAGGCCACAGGTTGCTGTTTTAGATTGTGCTGAGAAGGGTTACACGGTTATTACTATGAGGTGCAGGGATCGGCCGAAGTTGTTGTTTGATACTATCTGCACTCTAACTGATATGCAATATGTAGTGTTCCATGGAGTGGTTCACACAGGAAAGATGGAAGCTTATCAGGAATATTATATTAGACATGTTGATGGGACCCCGTTAAGCTCAGAGGCAGAGCGAGAGCGTGTTATGCAATGTCTGGAAGCTGCAATTGAGAGGAGGACGTCTGAAGAGGCAGTAGAGCTAGAATTGCGCACAGAGGACCGTGTTGGACTTCTTTCTGATATAACCAGGATCTTTAGAGAAAATAGTTTGTGTATAAAAAGAGCAGAGATTACAACTGAAGGTGGAAAAGCCAAGGACAAATTTTATGTGACGGACATGACGGGTAATGGGCCTGTGGACCCGAAGAGTATAGATTCGATCCGAAGAGAAATGGGTCAACACACGACGCTGGATGTTAGATGGAAGTGTAGTGAATTAGCAAAGCCACCACCTGAAGAAACAAAAATGAGCTTTCTGTTTGGAAACTTGTTCAGATCATACTCCTGA 1290 41.86 MEDEYAKLIRRMNPPRVKIDNKSSPDATVIQVESVNKHGILLEVVQVLADLDLIIKKAYISSDGGWFMDVFNVICQDGIKIRDEGMIDYITKVLENDAFYVPSLNGSVGLKPSEDYTAIELAGTDRPGLLSEVSAVLTDLGCNVVNAEIWTHNARAAAVVHVTDDKTRCAVEDPKRLSTIQKLLSNVLKGNNDLRAAKMTPGFMHRQRRLHQIMFAERDYEKSEQEEKENGSRPQVAVLDCAEKGYTVITMRCRDRPKLLFDTICTLTDMQYVVFHGVVHTGKMEAYQEYYIRHVDGTPLSSEAERERVMQCLEAAIERRTSEEAVELELRTEDRVGLLSDITRIFRENSLCIKRAEITTEGGKAKDKFYVTDMTGNGPVDPKSIDSIRREMGQHTTLDVRWKCSELAKPPPEETKMSFLFGNLFRSYS 429
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi18g00031 429 ProSiteProfiles ACT domain profile. 29 109 IPR002912 -
Armi18g00031 429 SUPERFAMILY ACT-like 113 188 IPR045865 -
Armi18g00031 429 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 7 403 IPR040217 -
Armi18g00031 429 CDD ACT-ACR-2 117 190 - -
Armi18g00031 429 ProSiteProfiles ACT domain profile. 118 201 IPR002912 -
Armi18g00031 429 CDD ACT-ACR-3 246 320 - -
Armi18g00031 429 Pfam ACT domain 119 166 IPR002912 -
Armi18g00031 429 Gene3D - 325 389 - -
Armi18g00031 429 Gene3D - 116 189 - -
Armi18g00031 429 SUPERFAMILY ACT-like 24 94 IPR045865 -
Armi18g00031 429 ProSiteProfiles ACT domain profile. 327 405 IPR002912 -
Armi18g00031 429 SUPERFAMILY ACT-like 323 394 IPR045865 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi18g00031 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr18:502629 Armi3g00671 Armi-Chr3:16423885 dispersed
Armi Armi-Chr10:9266486 Armi18g00031 Armi-Chr18:502629 transposed
Armi Armi-Chr18:502629 Armi5g01045 Armi-Chr5:24051756 wgd