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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi18g00044 ATGGACATGCAAAGTGATTTCGATCGGATTCTCTTCTTCGAGCATGCTCGCCGGAGTGCCGAAGTCACTTACGCCAAAAACCCTCTCGATACTGAGAACTTGACTAGATGGGGAGGGGCGTTGCTTGAATTGTCGACCTTCCAGAGTGTTCAGGAATCAAAAACTATGATTAAAGATGCTATATCAAAATTGGATGAAGCATTGTCGATTGATCCAAAGAGACATGATACCTTGTGGTGTATGGGCAATGCACAAACTTCTTATGCTTTTTTGACTCCTGATAAAGGAGAAGCTAAGGGTTATTTTGATTCAGCTTATACTTATTTTCAGCAGGCTGTTGATGAGGATCCAGGGAATGAACTTTACCGCAAATCATTGGAAGTGACTATCAAGGCACCTGAATTACACTCAGAGCTCCATAAACAGGGTCTGAGTCAACAAGCCATGGGACCAGGGTCCGGAGGGGGTCCTTCAACTTCTTCGAGTGTCAGGGGTCCGAAGGCACAAAAGAGCAGCGATCTGAAGTATGATATATTTGGATGGGTTATTCTTGCTGTTAGTATCGTGGCGTGGGTTGGATTCGCTAAAGCAAATGTACCTTCACCACCTCCACGATAA 618 44.66 MDMQSDFDRILFFEHARRSAEVTYAKNPLDTENLTRWGGALLELSTFQSVQESKTMIKDAISKLDEALSIDPKRHDTLWCMGNAQTSYAFLTPDKGEAKGYFDSAYTYFQQAVDEDPGNELYRKSLEVTIKAPELHSELHKQGLSQQAMGPGSGGGPSTSSSVRGPKAQKSSDLKYDIFGWVILAVSIVAWVGFAKANVPSPPPR 205
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi18g00044 205 MobiDBLite consensus disorder prediction 141 167 - -
Armi18g00044 205 Gene3D Tetratricopeptide repeat domain 1 149 IPR011990 GO:0005515(InterPro)
Armi18g00044 205 Pfam Plant specific mitochondrial import receptor subunit TOM20 7 196 - -
Armi18g00044 205 SUPERFAMILY TPR-like 13 126 IPR011990 GO:0005515(InterPro)
Armi18g00044 205 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 1 204 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi18g00044 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr4:135989192 Armi18g00044 Armi-Chr18:606680 transposed
Armi Armi-Chr18:606680 Armi3g00071 Armi-Chr3:1543048 wgd
Armi Armi-Chr18:606680 Armi5g01020 Armi-Chr5:23028469 wgd