AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00008 ATGGACTCGGAACAATCTTTCGGATACAGAGCGACTGGTGAAGGTTCATCTTACTACTCTTCTCACCCACAGATCCCCTTGAGGCTGTTTGAATCCTTAAAGTTTGAGGCAAGGGACTCCCCCAACTCTCCTTTCTTAACTCACTTTGATTCAGAGACTTTCACCACATTGAGTGACAGTCAAGAGAAGTACAGCTCTACCTCCGGTGCTAGTCTTTCCCTTGAAGATAGCAGCTCTTTTAACCAGTCGGGATCTTCTGCTTTTGTACAAAGTGGCGGTGTTCATTACATGAAAAATGCTCTTCAGGATATAGAGACTACTCTAATGGCACCAGATGAGGAAGTATCCATGCCCATAAACCCTCCCTCCGGACAAAACAGGTGGCCGCCAGCATCAAGCCAAGGCCCTAGACAGTGGACCCATGAACCTACCAGTTCAAACAAGGTTCAGCCCCAGGCTGTATATAGTCCGAGATATGGTCTATCTGGTGACGGACTTCATGCAGAGAAGCGTCAGAAGTCGATGGAAGAGGCAGGATTACAGGGTGTTCCATTTCCACTGGGTAATAATAATAATGATAATAATAATCTAAAGCAGTTGCTTATCGCATGTGCCAGTGCTCTTGCTGGGAACAAGGTTGACGAGTTTGAGGAATTGGTTGAACGTGCACGGGGTTGTGTGTCTATCAGTGGGGATCCTATCCAGAGGCTAGGCGCTTATATGGTGGAGGGGTTGGTGGCGAGGAGGGAATTATCTGGGAATAACATTTATCGAACCCTCAGGTGCAGGGAGCCTGAAGGGAAGGATTTGCTTTCTTACATGCAAATCTTATACGAAATATGCCCATACTTGAAGTTTGGATACATGGCTGCAAATGGTGCAATAGCAGAGGCTTGTGGAAAGGAAGAGCGAATCCACATCATAGACTTCCAAATAGCTCAAGGGACGCAGTGGATGACTCTTTTACAAGCACTTGCAGCGAGACCTGGAGGTGCACCTCATGTTCGTATCACAGGAATTGATGATCCTGTCTCCAAATACGCCCGTGGAGACAGTTTGGAATTGGTGGGAAAACGTTTGGAGGCAGTATCACAGAAATTCAACATCCGAGTGGAGTTTCAGCCACTTGCAGTTTATGCACCATATGTGACAAAAGAGATGCTTGATGTGAGAGATGGTGAGGCACTGGCAGTGAACTTCCCTCTTCAGCTCCACCACATGGCGGACGAGAGTGTTGATGTGAATAACCCAAGGGACGAGCGTTTGAGAATGGTGAAGTCGCTTTCACCCAAAGTGGTTACTTTGGTGGAGCAAGAATCAAACACAAATACAGCGGCTTTCTTTCCAAGGTTTGTGGAAGCCTTGGATTACTACTCTGCCATGTTTGAGTCGATGGATGCGAGTTTGGGTAGGGATAGGAAAGAAAGGATAAACGTGGAACAACACTGTCTGGCTCGAGACATTGTAAACATCATAGCGTGCGAGGGTAAGGAGAGAGTAGAACGTCATGAACTGTTGGGGAAGTGGAAATCTCGGTTGACGATGGCAGGTTTTAGACAGTATCCCCTGAGCTCATATGTGAATTCAGTGATAAGGAATTTGCTCAAGTGTTACTCGGATCACTATACGTTGGTGGAGAAAGAAGGAGGAGGTATGTTATTGGGATGGAAACACAGAAATCTTATATCAGCATCTGCTTGGCATTGA 1707 46.46 MDSEQSFGYRATGEGSSYYSSHPQIPLRLFESLKFEARDSPNSPFLTHFDSETFTTLSDSQEKYSSTSGASLSLEDSSSFNQSGSSAFVQSGGVHYMKNALQDIETTLMAPDEEVSMPINPPSGQNRWPPASSQGPRQWTHEPTSSNKVQPQAVYSPRYGLSGDGLHAEKRQKSMEEAGLQGVPFPLGNNNNDNNNLKQLLIACASALAGNKVDEFEELVERARGCVSISGDPIQRLGAYMVEGLVARRELSGNNIYRTLRCREPEGKDLLSYMQILYEICPYLKFGYMAANGAIAEACGKEERIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDSLELVGKRLEAVSQKFNIRVEFQPLAVYAPYVTKEMLDVRDGEALAVNFPLQLHHMADESVDVNNPRDERLRMVKSLSPKVVTLVEQESNTNTAAFFPRFVEALDYYSAMFESMDASLGRDRKERINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFRQYPLSSYVNSVIRNLLKCYSDHYTLVEKEGGGMLLGWKHRNLISASAWH 568
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00008 568 ProSiteProfiles GRAS family profile. 188 568 IPR005202 -
Armi1g00008 568 MobiDBLite consensus disorder prediction 59 84 - -
Armi1g00008 568 Pfam GRAS domain family 197 567 IPR005202 -
Armi1g00008 568 MobiDBLite consensus disorder prediction 119 150 - -
Armi1g00008 568 MobiDBLite consensus disorder prediction 114 150 - -
Armi1g00008 568 MobiDBLite consensus disorder prediction 1 22 - -
Armi1g00008 568 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 156 567 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00008 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
373447 Armi Armi1g00008 Armi-Chr1:234858 Armi7g00357 Armi-Chr7:6487668
403967 Armi Armi1g00008 Armi-Chr1:234858 Armi1g00255 Armi-Chr1:4594611
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Armi1g00008 . 118 489 GRAS Transcription Factor family AT5G48150 62.466 1.36e-167 483.0
Armi1g00096 . 169 545 GRAS Transcription Factor family AT3G03450 33.5 1.48e-63 216.0
Armi1g00255 . 62 490 GRAS Transcription Factor family AT5G48150 64.138 0.0 571.0
Armi1g00669 . 40 490 GRAS Transcription Factor family AT5G48150 60.385 0.0 575.0
Armi1g00997 . 159 240 GRAS Transcription Factor family AT1G50420 75.61 5.82e-40 135.0
Armi1g02593 ACH 209 584 GRAS Transcription Factor family AT5G66770 26.142 8.97e-20 90.9
Armi1g02594 ACH 242 584 GRAS Transcription Factor family AT5G66770 26.554 1.13e-20 93.6
Armi1g04002 . 86 767 GRAS Transcription Factor family AT1G07530 48.201 0.0 598.0
Armi1g04372 . 430 544 GRAS Transcription Factor family AT3G03450 36.752 2.49e-14 65.9
Armi1g04467 . 37 714 GRAS Transcription Factor family AT2G37650 50.07 0.0 672.0
Armi2g00639 ACH 154 516 GRAS Transcription Factor family AT5G17490 37.435 4.90e-72 238.0
Armi2g02170 . 284 653 GRAS Transcription Factor family AT3G54220 37.436 2.43e-58 202.0
Armi3g00224 . 35 405 GRAS Transcription Factor family AT5G41920 68.435 0.0 514.0
Armi3g00356 . 39 582 GRAS Transcription Factor family AT2G01570 63.41 0.0 684.0
Armi3g02551 ACH 29 640 GRAS Transcription Factor family AT5G52510 45.879 5.39e-145 433.0
Armi3g03095 . 86 767 GRAS Transcription Factor family AT1G07530 45.743 0.0 574.0
Armi3g04190 . 1 582 GRAS Transcription Factor family AT2G01570 61.386 0.0 702.0
Armi4g00997 . 4 482 GRAS Transcription Factor family AT1G50420 66.806 0.0 649.0
Armi4g02214 . 23 529 GRAS Transcription Factor family AT1G14920 62.936 0.0 665.0
Armi4g02577 ACH 37 486 GRAS Transcription Factor family AT4G36710 49.675 8.33e-138 405.0
Armi4g02716 ACH 118 530 GRAS Transcription Factor family AT4G37650 60.337 1.73e-178 509.0
Armi4g04036 . 86 768 GRAS Transcription Factor family AT1G07530 45.586 0.0 570.0
Armi4g04547 ACH 31 640 GRAS Transcription Factor family AT5G52510 40.895 9.19e-130 394.0
Armi5g00039 . 180 555 GRAS Transcription Factor family AT4G00150 45.25 1.88e-100 316.0
Armi5g01348 . 159 240 GRAS Transcription Factor family AT1G50420 69.512 1.20e-37 129.0
Armi5g02101 . 1 530 GRAS Transcription Factor family AT1G14920 56.364 0.0 604.0
Armi6g01162 . 170 547 GRAS Transcription Factor family AT3G03450 30.357 2.25e-53 188.0
Armi6g01278 . 186 555 GRAS Transcription Factor family AT4G00150 45.455 5.72e-98 311.0
Armi6g01481 . 1 654 GRAS Transcription Factor family AT1G63100 50.857 0.0 590.0
Armi7g00051 . 1 510 GRAS Transcription Factor family AT3G13840 48.381 6.55e-156 453.0
Armi7g00357 . 11 490 GRAS Transcription Factor family AT5G48150 61.176 0.0 608.0
Armi7g00487 . 135 507 GRAS Transcription Factor family AT1G66350 30.673 2.58e-57 198.0
Armi7g02168 . 27 529 GRAS Transcription Factor family AT1G14920 48.544 3.22e-160 464.0
Armi8g01131 . 159 240 GRAS Transcription Factor family AT1G50420 69.512 4.35e-36 125.0
Armi8g02678 . 159 240 GRAS Transcription Factor family AT1G50420 74.39 4.87e-40 135.0
Armi8g02860 . 40 444 GRAS Transcription Factor family AT1G55580 50.483 4.70e-123 364.0
Armi9g01682 . 4 482 GRAS Transcription Factor family AT1G50420 64.108 0.0 603.0
Armi10g01267 . 141 530 GRAS Transcription Factor family AT4G37650 49.502 7.52e-128 378.0
Armi10g01280 . 118 530 GRAS Transcription Factor family AT4G37650 50.23 5.03e-139 406.0
Armi10g01960 ACH 160 555 GRAS Transcription Factor family AT4G00150 54.916 1.95e-143 428.0
Armi11g01042 . 1 525 GRAS Transcription Factor family AT4G17230 55.296 0.0 565.0
Armi11g01601 . 6 409 GRAS Transcription Factor family AT3G49950 45.107 7.53e-119 351.0
Armi12g01132 . 13 52 GRAS Transcription Factor family AT1G14920 62.5 4.59e-11 55.8
Armi12g01157 . 154 522 GRAS Transcription Factor family AT5G17490 34.085 1.06e-51 181.0
Armi12g01390 . 18 593 GRAS Transcription Factor family AT1G21450 54.892 0.0 607.0
Armi13g00006 . 144 507 GRAS Transcription Factor family AT1G66350 44.094 1.09e-98 311.0
Armi13g00362 . 43 110 GRAS Transcription Factor family AT1G50420 58.824 3.96e-22 87.0
Armi13g00630 ACH 118 530 GRAS Transcription Factor family AT4G37650 55.396 4.57e-156 449.0
Armi13g00935 ACH 37 484 GRAS Transcription Factor family AT4G36710 49.892 5.37e-135 397.0
Armi14g01351 ACH 130 507 GRAS Transcription Factor family AT1G66350 35.5 1.63e-72 238.0
Armi14g01454 . 41 490 GRAS Transcription Factor family AT5G48150 64.835 0.0 597.0
Armi14g01664 . 40 444 GRAS Transcription Factor family AT1G55580 50.355 8.35e-130 382.0
Armi15g00431 ACH 87 555 GRAS Transcription Factor family AT4G00150 50.622 7.05e-166 485.0
Armi16g00195 ACH 242 545 GRAS Transcription Factor family AT5G66770 27.358 1.78e-17 83.6
Armi16g00196 ACH 152 515 GRAS Transcription Factor family AT5G17490 25.789 3.35e-21 94.7
Armi16g01005 ACH 316 767 GRAS Transcription Factor family AT1G07530 50.552 5.28e-163 483.0
Armi16g01010 . 302 764 GRAS Transcription Factor family AT1G07530 50.743 3.08e-166 491.0
Armi16g01012 . 20 767 GRAS Transcription Factor family AT1G07530 48.497 0.0 654.0
Armi16g01052 . 148 490 GRAS Transcription Factor family AT5G48150 73.761 0.0 531.0
Armi16g01053 . 132 238 GRAS Transcription Factor family AT1G50600 39.091 7.50e-06 42.7
Armi17g00009 . 232 651 GRAS Transcription Factor family AT3G54220 77.752 0.0 658.0
Armi17g00399 . 73 713 GRAS Transcription Factor family AT2G37650 51.78 0.0 659.0
Armi17g01130 ACH 25 767 GRAS Transcription Factor family AT1G07530 49.137 0.0 655.0
Armi17g01455 . 281 653 GRAS Transcription Factor family AT3G54220 54.521 1.34e-141 420.0
Armi18g00397 . 12 409 GRAS Transcription Factor family AT3G49950 61.446 0.0 513.0
Armi18g00410 ACH 1 530 GRAS Transcription Factor family AT4G37650 55.435 0.0 548.0
Armi18g00560 ACH 37 485 GRAS Transcription Factor family AT4G36710 50.542 1.88e-140 412.0
Armi18g00591 . 1 584 GRAS Transcription Factor family AT5G66770 57.647 0.0 602.0
Armi18g00671 . 159 240 GRAS Transcription Factor family AT1G50420 71.951 4.07e-37 128.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Armi GRAS 2.1e-131 CL0063 TF GRAS